Southern Ocean metagenomes - SRA

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SRX26478717: Southern Ocean metagenomes
1 ILLUMINA (Illumina NovaSeq 6000) run: 10,019 spots, 2.9M bases, 1.1Mb downloads

Design: Library preparation was performedusing KAPA Hyper Prep kit with PCR (Roche, Basel, Switzerland) per manufacturers recommendations. Library qualityand quantity were assessed with Qubit 2.0 DNA HS Assay (ThermoFisher, Massachusetts, USA), Tapestation HighSensitivity D1000 Assay (Agilent Technologies, California, USA), and QuantStudio 5 System (Applied Biosystems,California, USA). Illumina 8-nt dual-indices were used. Equimolar pooling of libraries was performed based on QC valuesand sequenced on an Illumina NovaSeq (Illumina, California, USA) with a read length configuration of 150 PE for [50] MPE reads ([25]M in each direction)

Submitted by: University of Pretoria

Study: Southern Ocean metagenomes

PRJNA1176684 • SRP540460 • All experiments • All runs

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metagenome reads from the Southern Ocean

Sample:

SAMN43987089 • SRS22960457 • All experiments • All runs

Organism: Opitutales bacterium

Library:

Name: PUZ-DCM_metabat.5

Instrument: Illumina NovaSeq 6000

Strategy: WGS

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 10,019 spots, 2.9M bases, 1.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR31095656	10,019	2.9M	1.1Mb	2024-10-23

ID:: 35771159

SRA

Sequence Read Archive

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