Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX1661742: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Typhimurium var. O:5- by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 744,690 spots, 362.1M bases, 229.8Mb downloads

External Id: EXT00176171

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: Texas Department of State Health Services

PRJNA284276 • SRP059203 • All experiments • All runs

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Whole genome sequencing of cultured Salmonella as part of the US Food and Drug Administration surveillance project for the rapid detection of outbreaks of foodborne illnesses.

Sample:

SAMN04255232 • SRS1361366 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Typhimurium var. 5-

Library:

Name: Salmonella enterica subsp. enterica serovar Typhimurium var. O:5- Nextera XT shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Typhimurium var. O:5-.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	MiSeq Reporter	2.3

Runs: 1 run, 744,690 spots, 362.1M bases, 229.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR3294535	744,690	362.1M	229.8Mb	2016-03-25

ID:: 2380441

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