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SRX1598350: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Schwarzengrund by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.3M spots, 628.5M bases, 374.6Mb downloads

External Id: EXT00166200
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: Texas Department of State Health Services
PRJNA284276 • SRP059203 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Salmonella as part of the US Food and Drug Administration surveillance project for the rapid detection of outbreaks of foodborne illnesses.
Sample:
SAMN04255155 • SRS1308318 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Schwarzengrund
Library:
Name: Salmonella enterica subsp. enterica serovar Schwarzengrund Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Schwarzengrund.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 1.3M spots, 628.5M bases, 374.6Mb
Run# of Spots# of BasesSizePublished
SRR31850891,323,926628.5M374.6Mb2016-02-24

ID:
2257939

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