U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX25381862: RNA seq of mouse infected cDC2.#2
1 ILLUMINA (NextSeq 500) run: 1.3M spots, 101.5M bases, 40Mb downloads

Design: 1,000 Cells were double-sorted by Moflo into 5ul Buffer TCL (Qiagen) with 1% 2-Mercaptoethanol (Sigma).Total RNA was captured and purified on RNAClean XP beads (Beckman Coulter) Polyadenylated mRNA was selected using an anchored oligo(dT) primer and converted to cDNA via reverse transcription. First-strand cDNA was subjected to limited PCR amplification followed by transposon-based fragmentation using the Nextera XT DNA Library Preparation Kit (Illumina). Samples were then PCR-amplified using barcoded primers such that each sample carried a specific combination of illumine P5 and P7 barcodes, and were pooled prior to sequencing. Sequencing was performed on an illumina NextSeq500 using 2X38bp reads.
Submitted by: Harvard Medical School
Study: Dendritic cell response following Chlamydia trachomatis infection in Mus musculus
show Abstracthide Abstract
The lack of effective adaptive immunity against Chlamydia trachomatis leads to chronic or repeated infection and serious disease sequelae. Dendritic cells (DCs) are professional antigen presenting cells that are crucial for the activation of T cells during C. trachomatis infection. cDC1s and cDC2s are the two main DC subsets responsible for T cell priming, but little is known about how C. trachomatis affects their ability to prime T cells. Using a mouse model of infection, we investigated the responses of cDC1s and cDC2s upon infection. RNA sequencing of DCs from infected mice showed upregulation of cell death pathways. We validated our findings with mouse and human DCs in vitro, also observing C. trachomatis-induced cell death. These results indicate that C. trachomatis may evade the adaptive immune system by directly inducing cell death in DCs.
Sample:
SAMN42503074 • SRS22046588 • All experiments • All runs
Organism: Mus musculus
Library:
Name: i2b
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 1.3M spots, 101.5M bases, 40Mb
Run# of Spots# of BasesSizePublished
SRR298856361,336,169101.5M40Mb2024-12-14

ID:
33822813

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...