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SRX25335206: RNAseq of Peromyscus manuculatus: ault male right ventricle of the heart
1 ILLUMINA (Illumina HiSeq 4000) run: 17.8M spots, 5.3G bases, 1.6Gb downloads

Design: RNA was extracted using a SMART-Seq HT kit for full-length cDNA synthesis and amplification. Sequencing libraries were prepared using an Illumina Nextera X kit, quality checked using a TapeStation
Submitted by: University of Montana
Study: RNAseq from North American Deer Mouse (Peromyscus maniculatus) exposed to hypoxic cold stress for lung and right ventricle of the heart
show Abstracthide Abstract
A fundamental question in evolutionary biology concerns the relative contributions of phenotypic plasticity vs. local adaptation (genotypic specialization) in enabling wide-ranging species to inhabit diverse environmental conditions. Here we conduct a long-term hypoxia acclimation experiment to assess the relative roles of local adaptation and plasticity in enabling highland and lowland deer mice (Peromyscus maniculatus) to sustain aerobic thermogenesis at progressively increasing elevations. We assessed the relative physiological performance capacities of highland and lowland natives as they were exposed to progressive, stepwise increases in hypoxia, simulating the gradual ascent from sea level to an elevation of 6000 m. The final elevation of 6000 m far exceeds the highest attainable elevations within the species' range, and therefore tests the animals' ability to tolerate levels of hypoxia that surpass the prevailing conditions within their current distributional limits. Our results demonstrate that highland natives exhibit superior thermogenic capacities at the most severe levels of hypoxia, suggesting that the species broad fundamental niche and its ability to inhabit such a broad range of elevational zones is attributable to a combination of genetically based local adaptation and evolved changes in the acclimatization response to hypoxic cold stress. Results of the acclimation experiments also provide insights into the transcriptomic and physiological underpinnings of changes in whole animal performance that distinguish highland and lowland mice.
Sample:
SAMN42501831 • SRS22002811 • All experiments • All runs
Library:
Name: CC4MEAT-Right-ventricle
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: unspecified
Layout: PAIRED
Runs: 1 run, 17.8M spots, 5.3G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR2983729717,750,6965.3G1.6Gb2024-08-26

ID:
33677684

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