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SRX1502246: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Johannesburg by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 617,821 spots, 300.7M bases, 181.7Mb downloads

External Id: EXT00154798
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center
PRJNA183850 • SRP028607 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN04224238 • SRS1223512 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Johannesburg
Library:
Name: Salmonella enterica subsp. enterica serovar Johannesburg Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Johannesburg.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 617,821 spots, 300.7M bases, 181.7Mb
Run# of Spots# of BasesSizePublished
SRR3055305617,821300.7M181.7Mb2015-12-24

ID:
2125710

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