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SRX1422992: Whole genome shotgun sequencing of Escherichia coli by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 728,332 spots, 337.3M bases, 207.3Mb downloads

External Id: EXT00146712
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: CFSAN
Study: GenomeTrakr Project: Texas Department of State Health Services
PRJNA284275 • SRP061878 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Escherichia coli as part of the FDA GenomeTrakr surveillance project for rapid source tracking of foodborne illness outbreaks.
Sample:
SAMN04148318 • SRS1155420 • All experiments • All runs
Organism: Escherichia coli
Library:
Name: Escherichia coli Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Escherichia coli.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 728,332 spots, 337.3M bases, 207.3Mb
Run# of Spots# of BasesSizePublished
SRR2911023728,332337.3M207.3Mb2015-11-06

ID:
2014516

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