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SRX23619397: GSM8078802: Amphioxus_21hpf_ATACseq rep1; Branchiostoma lanceolatum; ATAC-seq
1 ILLUMINA (NextSeq 500) run: 28.2M spots, 2.8G bases, 1.3Gb downloads

External Id: GSM8078802_r1
Submitted by: Sebe-Pedros lab, Systems Biology, Centre for Genomic Regulation
Study: An amphioxus neurula stage cell atlas supports a complex scenario for the emergence of vertebrate head mesoderm
PRJNA1076257 • SRP489656 • All experiments • All runs
show Abstracthide Abstract
We performed single-cell transcriptome analysis (using MARS-seq) and accessible chromatin profiling (ATAC-seq) in Branchiostoma lanceolatum embryos (21 hours post-fertilization) Overall design: Embryos were dissociated and pooled before sorting single-cells for scRNAseq.
Sample: Amphioxus_21hpf_ATACseq rep1
SAMN39942007 • SRS20459713 • All experiments • All runs
Organism: Branchiostoma lanceolatum
Library:
Name: GSM8078802
Instrument: NextSeq 500
Strategy: ATAC-seq
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: ATAC-seq was perform as detailed in the OmniATAC protocol (doi.org/10.1038/nmeth.4396). Around 50,000 cells were used for each tagmentation reaction. 21hpf embyos (19C) were dissociated and pooled before sorting single-cells for scRNAseq or ATAC-seq experiments.
Runs: 1 run, 28.2M spots, 2.8G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
SRR2796298228,153,5312.8G1.3Gb2024-04-10

ID:
31895118

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