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SRX1453349: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Anatum by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 750,318 spots, 363.7M bases, 219.5Mb downloads

External Id: EXT00150227
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: CFSAN
Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center
PRJNA183850 • SRP028607 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN03838147 • SRS1181034 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Anatum
Library:
Name: Salmonella enterica subsp. enterica serovar Anatum Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Anatum.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 750,318 spots, 363.7M bases, 219.5Mb
Run# of Spots# of BasesSizePublished
SRR2962384750,318363.7M219.5Mb2015-11-27

ID:
2052760

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