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SRX22143637: RNA-seq of Euglena gracilis: photoautotrophic growth at 22C in modified acid media; sampled after 8 days in MAM
1 ILLUMINA (Illumina NovaSeq 6000) run: 18.5M spots, 5.6G bases, 1.7Gb downloads

Design: Total RNA was isolated using TRIzol and treated with DNase I; Poly(A) mRNA was enriched using oligo dT-beads and cDNA libraries were prepared using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina.
Submitted by: Trent University
Study: The impact of elevated sulfur and nitrogen levels on cadmium tolerance in Euglena species
show Abstracthide Abstract
Heavy metal (HM) pollution threatens human and ecosystem health. Current methods for remediating water contaminated with HMs are expensive and have limited effect. Therefore, bioremediation is being investigated as an environmentally and economically viable alternative. Freshwater protists Euglena gracilis and Euglena mutabilis were investigated for their tolerance to cadmium (Cd). A greater increase in cell numbers under Cd stress was noted for E. mutabilis but only E. gracilis showed an increase in Cd tolerance following pre-treatment with elevated concentrations of S or N. To gain insight regarding the nature of the increased tolerance RNA-sequencing was carried out on E. gracilis. This revealed transcript level changes among pretreated cells, and additional differences among cells exposed to CdCl2. Gene ontology (GO) enrichment analysis reflected changes in S and N metabolism, transmembrane transport, stress response, and physiological processes related to metal binding. Identifying these changes enhances our understanding of how these organisms adapt to HM polluted environments and allows us to target development of future pre-treatments to enhance the use of E. gracilis in bioremediation relating to heavy metals.
Sample: Total RNA was isolated using TRIzol and treated with DNase I; Poly(A) mRNA was enriched using oligo dT-beads and cDNA libraries were prepared using the NEBNext Ultra Directional RNA Library Prep Kit for Illumina.
SAMN37882622 • SRS19203358 • All experiments • All runs
Library:
Name: S3_Cd_Ln1
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: PolyA
Layout: PAIRED
Runs: 1 run, 18.5M spots, 5.6G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR2643891318,529,2955.6G1.7Gb2024-11-01

ID:
30096142

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