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SRX1077287: Whole genome shotgun sequencing of Salmonella enterica str. FLUFL-1692 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 919,387 spots, 419.4M bases, 243.6Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: Florida Department of Health, University of Florida
PRJNA183848 • SRP028812 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN03787561 • SRS975734 • All experiments • All runs
Organism: Salmonella enterica
Library:
Name: Salmonella enterica str. FLUFL-1692 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica str. FLUFL-1692.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 919,387 spots, 419.4M bases, 243.6Mb
Run# of Spots# of BasesSizePublished
SRR2082804919,387419.4M243.6Mb2015-07-05

ID:
1563547

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