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SRX20165374: Whole-genome sequencing of Clostridioides difficile from rectal swabs and stool samples in an ICU setting
1 ILLUMINA (Illumina MiSeq) run: 1.3M spots, 735.8M bases, 389.4Mb downloads

Design: Illumina library prep using Nextera DNA CD indices
Submitted by: Brigham and Women's Hospital
Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA
PRJNA278886 • SRP056445 • All experiments • All runs
show Abstracthide Abstract
The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.
Sample:
SAMN34492982 • SRS17489483 • All experiments • All runs
Organism: Clostridioides difficile
Library:
Name: 0000-0094-9999
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 1.3M spots, 735.8M bases, 389.4Mb
Run# of Spots# of BasesSizePublished
SRR243770351,316,841735.8M389.4Mb2023-05-01

ID:
27582536

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