Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX1596657: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 2.4M spots, 1.1G bases, 664.9Mb downloads

External Id: EXT00165650

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: Hawaii State Department of Health - HSLD

PRJNA274995 • SRP056359 • All experiments • All runs

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Whole genome sequencing of cultured Salmonella enterica as part of the US Food and Drug Administration's WGS surveillance effort for the rapid detection of foodborne illness outbreaks.

Sample:

SAMN03431364 • SRS1306680 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Java

Library:

Name: Salmonella enterica subsp. enterica Nextera XT shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	MiSeq Reporter	2.3

Runs: 1 run, 2.4M spots, 1.1G bases, 664.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR3182490	2,351,949	1.1G	664.9Mb	2016-02-22

ID:: 2252496

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