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SRX19927472: Whole-genome sequencing of Clostridioides difficile from rectal swabs and stool samples in an ICU setting
1 ILLUMINA (Illumina MiSeq) run: 580,578 spots, 320.1M bases, 176Mb downloads

Design: Illumina library prep using Nextera DNA CD indices
Submitted by: Brigham and Women's Hospital
Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA
PRJNA278886 • SRP056445 • All experiments • All runs
show Abstracthide Abstract
The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.
Sample:
SAMN34139036 • SRS17278498 • All experiments • All runs
Organism: Clostridioides difficile
Library:
Name: 0000-0094-6202
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 580,578 spots, 320.1M bases, 176Mb
Run# of Spots# of BasesSizePublished
SRR24128642580,578320.1M176Mb2023-04-11

ID:
27302145

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