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SRX19840060: DNA seq of Paenibacillus larvae
1 OXFORD_NANOPORE (GridION) run: 237,794 spots, 463.5M bases, 395.2Mb downloads

Design: DNA isolation was performed using QiagenMagAttract HMW DNA Kit. Genomes assembled using Flye.
Submitted by: University of Saskatchewan
Study: Paenibacillus larvae isolates
show Abstracthide Abstract
American foulbrood (AFB) is a fatal infectious disease of honey bee brood caused by the endospore-forming bacterium, Paenibacillus larvae. P. larvae spores are resilient in the environment and thus colonies showing clinical signs of AFB are often destroyed by burning to eradicate the causative agent. To prevent outbreaks of AFB, oxytetracycline metaphylaxis is widely used in North America, resulting in sustained selective pressure for oxytetracycline resistance in P. larvae isolates. To identify ARG`s in the P. larvae population of SK, whole genome sequencing of 17 representative isolates has been conducted using Oxford Nanopore technology, supplemented with 4 isolates that had Illumina MiSeq WGS.
Sample:
SAMN33913313 • SRS17198671 • All experiments • All runs
Library:
Name: PL010
Instrument: GridION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 237,794 spots, 463.5M bases, 395.2Mb
Run# of Spots# of BasesSizePublished
SRR24037480237,794463.5M395.2Mb2024-04-01

ID:
27197789

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