Whole genome shotgun sequencing of Shigella flexneri subsp. serovar 3... - SRA

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SRX884264: Whole genome shotgun sequencing of Shigella flexneri subsp. serovar 3a str. DMB SH108 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 890,949 spots, 239M bases, 137.4Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration - CFSAN

PRJNA273284 • SRP055205 • All experiments • All runs

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Whole genome sequencing of cultured Shigella as part of FDA/CFSAN's surveillance project for rapid source tracking of foodborne illness outbreaks.

Sample:

SAMN03291501 • SRS851282 • All experiments • All runs

Organism: Shigella flexneri

Library:

Name: Shigella flexneri str. DMB SH108 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Shigella flexneri subsp. serovar 3a str. DMB SH108.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 890,949 spots, 239M bases, 137.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR1811702	890,949	239M	137.4Mb	2015-02-20

ID:: 1268233

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