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SRX884239: Whole genome shotgun sequencing of Shigella boydii subsp. serovar 2 str. DMB SH130 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 381,587 spots, 112.1M bases, 67.5Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: US Food and Drug Administration - CFSAN
PRJNA273284 • SRP055205 • All experiments • All runs
show Abstracthide Abstract
Whole genome sequencing of cultured Shigella as part of FDA/CFSAN's surveillance project for rapid source tracking of foodborne illness outbreaks.
Sample:
SAMN03291467 • SRS851248 • All experiments • All runs
Organism: Shigella boydii
Library:
Name: Shigella boydii str. DMB SH130 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Shigella boydii subsp. serovar 2 str. DMB SH130.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 381,587 spots, 112.1M bases, 67.5Mb
Run# of Spots# of BasesSizePublished
SRR1811677381,587112.1M67.5Mb2015-02-20

ID:
1268208

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