Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX838796: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Typhimurium str. AUCVM-IPStrain by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 902,379 spots, 390.8M bases, 222.1Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: Florida Department of Health, University of Florida

PRJNA183848 • SRP028812 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN03269320 • SRS815540 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Typhimurium

Library:

Name: Salmonella enterica str. AUCVM-IPStrain shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Typhimurium str. AUCVM-IPStrain.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 902,379 spots, 390.8M bases, 222.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR1752808	902,379	390.8M	222.1Mb	2015-01-12

ID:: 1188595

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