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SRX717720: Whole genome shotgun sequencing of Salmonella enterica str. FLUFL-1215 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 470.6M bases, 266.5Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: Florida Department of Health, University of Florida
PRJNA183848 • SRP028812 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample:
SAMN03024446 • SRS713588 • All experiments • All runs
Organism: Salmonella enterica
Library:
Name: Salmonella enterica str. FLUFL-1215 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica str. FLUFL-1215.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.54
Runs: 1 run, 1.1M spots, 470.6M bases, 266.5Mb
Run# of Spots# of BasesSizePublished
SRR15933971,104,384470.6M266.5Mb2014-09-30

ID:
1009049

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