Short read sequencing of E. coli: Extreme heat resistant - SRA

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SRX16085044: Short read sequencing of E. coli: Extreme heat resistant
1 ILLUMINA (Illumina MiSeq) run: 415,508 spots, 125.5M bases, 67.3Mb downloads

Design: Library was prepared with TruSeq DNA PCR-free LP kit. gDNA was sheared to an average size of 350 bp using Covaris microtubes.Paired read sequencing was performed on MiSeq platform using kit v2 (300 cycles)

Submitted by: US Meat Animal Research Center

Study: Heat Resistant Escherichia coli Genome sequencing

PRJNA663878 • SRP313600 • All experiments • All runs

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Locus of heat resistance (LHR) contributes to global stress tolerance in bacteria, including extreme heat resistance. LHR E. coli in meat poses a food safety concern. Therefore, this study screened for (LHR) among meat borne E. coli isolated from different stages of meat processing. Further, this study presents a complete genome sequencing and comparative analysis of these heat resistant bacteria to provide clearer understanding of stress resistance mechanisms.

Sample:

SAMN29582358 • SRS13750997 • All experiments • All runs

Organism: Escherichia coli

Library:

Name: LIB107683

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 415,508 spots, 125.5M bases, 67.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR20046569	415,508	125.5M	67.3Mb	2023-08-30

ID:: 22772850

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