Whole genome shotgun sequencing of Salmonella enterica subsp. arizona... - SRA

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SRX553296: Whole genome shotgun sequencing of Salmonella enterica subsp. arizonae serovar IIIa 18:z4,z32:- str. FL-NRM020 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.3M spots, 498.8M bases, 270.2Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: Florida Department of Health, University of Florida

PRJNA183848 • SRP028812 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample:

SAMN02766965 • SRS620590 • All experiments • All runs

Organism: Salmonella enterica subsp. arizonae

Library:

Name: Salmonella enterica str. FL-NRM020 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. arizonae serovar IIIa 18:z4,z32:- str. FL-NRM020.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.42

Runs: 1 run, 1.3M spots, 498.8M bases, 270.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR1299279	1,349,778	498.8M	270.2Mb	2014-06-01

ID:: 790640

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