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SRX620811: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Cerro str. NY-FSL-R8-1632 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.4M spots, 689.2M bases, 349.9Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center
PRJNA183850 • SRP028607 • All experiments • All runs
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample: PAN0
SAMN02664923 • SRS645216 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Cerro
Library:
Name: Salmonella enterica str. NY-FSL-R8-1632 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Cerro str. NY-FSL-R8-1632.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.42
Runs: 1 run, 1.4M spots, 689.2M bases, 349.9Mb
Run# of Spots# of BasesSizePublished
SRR14488691,413,866689.2M349.9Mb2014-06-23

ID:
869585

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