Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

Links from BioSample

SRX566108: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-318772' containing sample 'VET0252R'
4 ILLUMINA (Illumina HiSeq 2000) runs: 15.6M spots, 3.2G bases, 1.5Gb downloads

UUID: 4d3f4647-65ed-4c48-a3f9-1f94dabd5efe

Design: Illumina sequencing of Staphylococcus aureus VET0252R via random selection

Submitted by: Broad Institute (BI)

Study: MRSA ST398

PRJNA228624 • SRP042721 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus VET0252R

SAMN02404116 • SRS626363 • All experiments • All runs

Organism: Staphylococcus aureus VET0252R

Library:

Name: Pond-318772

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 471533.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:5CLG6

material_type: DNA:DNA Somatic

product_order: PDO-2557

product_part_number: P-WG-0004

project: G55347

research_project: RP-513

root_sample_id: SM-4Q5OR

sample_id: SM-5CLG6

work_request: 39368

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2014-02-01 14:58:37.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 4 runs, 15.6M spots, 3.2G bases, 1.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR1326997	3,890,963	786M	390.2Mb	2014-06-03
SRR1342134	3,899,611	787.7M	388.9Mb	2014-06-05
SRR1344760	3,928,515	793.6M	390Mb	2014-06-06
SRR1344805	3,877,079	783.2M	385.5Mb	2014-06-06

ID:: 808925

SRA

Sequence Read Archive

Result Filters

Send to:

Links from BioSample

Supplemental Content

Related information

Recent activity