U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX13318183: Genome sequencing of Latilactobacillus sakei subsp. Carnosus
1 ILLUMINA (Illumina NovaSeq 6000) run: 2M spots, 614.3M bases, 199.8Mb downloads

Design: The isolate was grown in half-strength Brain Heart Infusion Broth (Oxoid, Mississauga, ON, Canada) at 35oC for 24h. The DNA of each culture was extracted using Qiagen Blood and Tissue DNA purifrication kit following the manufactures instruction. The DNA samples were sent to Genome Quebec Innovation Centre, Montreal, QC, Canada for sequencing. Sequencing library was constructed using NEBNext Ultra II DNA Library Prep Kit and sequenced for 1502 cycles.
Submitted by: Agriculture and Agri-Food Canada
Study: Microbiota on vacuum-packaged chilled beef steaks inoculated with a Carnobacterium maltaromaticum strain
show Abstracthide Abstract
A Carnobacterium maltaromaticum strain, A5, was associated with a very long storage life of vacuum packaged beef and was able to inhibit the growth of multiple strains of spoilage associated and pathogenic bacteria that are of importance to beef under lab conditions. The present study investigated whether the inhibitory effect of this strain at very low numbers can be reproduced in vivo, i.e. on chilled vacuum packaged beef. C. maltaromaticum A5 up to 2 log CFU per cm2 was spiked onto beef steaks. The steaks were vacuum packaged and stored at 2oC for up to 12 weeks. The dynamics of the microbiota were determined by both conventional plating and 16S rRNA gene amplicon sequencing methods. The predominant bacterial species at the end of storage were determined using both whole metagenome sequencing and whole genome sequencing.
Library:
Name: L4A
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 2M spots, 614.3M bases, 199.8Mb
Run# of Spots# of BasesSizePublished
SRR171337262,033,976614.3M199.8Mb2023-12-04

ID:
18230313

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...