Whole genome shotgun sequencing of Escherichia coli subsp. serovar O1... - SRA

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SRX347703: Whole genome shotgun sequencing of Escherichia coli subsp. serovar O145:NM str. 2012C-4477 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.9M spots, 879.9M bases, 583.7Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: Foodborne Pathogen Survey

PRJNA218648 • SRP029779 • All experiments • All runs

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Genome Sequencing Project

Sample: Pathogen sample from Escherichia coli O145:NM str. 2012C-4477

SAMN02352668 • SRS478493 • All experiments • All runs

Organism: Escherichia coli O145:NM str. 2012C-4477

Library:

Name: Escherichia coli str. CFSAN003930_01 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Escherichia coli subsp. serovar O145:NM str. 2012C-4477.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.17.28

Runs: 1 run, 1.9M spots, 879.9M bases, 583.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR975375	1,892,105	879.9M	583.7Mb	2013-09-10

ID:: 494055

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