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SRX13244643: GSM5706454: invivo_day5_Fp_PEB0191 [D5_1]; Frischella perrara; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 42.1M spots, 5.3G bases, 2.1Gb downloads

Submitted by: NCBI (GEO)
Study: RNA sequencing of Frischella perrara
PRJNA784285 • SRP348273 • All experiments • All runs
show Abstracthide Abstract
RNA sequencing of Frischella perrara PEB0191 during in vitro growth and gut colonization Overall design: In vitro experiment: RNA sequencing of Frischella perrara PEB0191 wild type and ihfA* mutant after 16h of growth on modified TYG agar. In vivo experiment: RNA sequencing of Frischella perrara PEB0191 during gut colonization. Sampling after 5 days and 10 days post-inoculation. RNA sequencing of Frischella perrara PEB0191 after 16h of growth on modified TYG agar was used as reference condition.
Sample: invivo_day5_Fp_PEB0191 [D5_1]
SAMN23481782 • SRS11168062 • All experiments • All runs
Organism: Frischella perrara
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Trizol-based RNA extraction RiboZero rRNA depletion followed by Illumina Truseq library preparation. In vivo samples were depleted of eukaryotic mRNA usig polyA-depletion
Experiment attributes:
GEO Accession: GSM5706454
Links:
Runs: 1 run, 42.1M spots, 5.3G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR1705571442,062,2525.3G2.1Gb2021-12-01

ID:
18121892

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