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SRX11632743: Whole genome sequencing of oral isolates of Streptococcus species
1 ILLUMINA (Illumina NovaSeq 6000) run: 7.3M spots, 2.2G bases, 689.9Mb downloads

Design: standard multiplex pooled library with size selection
Submitted by: Institute for Genome Sciences, University of Maryland, Baltimore
Study: Genome sequencing and assembly of Streptococcus genomes
show Abstracthide Abstract
Host colonization by streptococci is facilitated by glycan binding in both healthy dental plaque and infective endocarditis. The variety of glycan binding specificity among different oral steptococcal species is currently unknown. In this study, streptococcal strains were isolated from the oral cavity of humans, chimpanzees, and gorillas. Isolates were tested for binding to sialoglycans via hemagglutination and sialoglycan microarray. Many unique glycan binding profiles were observed. Glycan binding profiles did not correlate with bacterial species or host species. Genome sequencing revealed that glycan binding profiles correlate with the predicted amino acid sequence of serine-rich repeat proteins, adhesins known to bind sialoglycans.
Sample: Whole genome sequencing of oral isolate Streptococcus oralis 102
SAMN20399934 • SRS9666422 • All experiments • All runs
Library:
Name: Soralis_102
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: PAIRED
Runs: 1 run, 7.3M spots, 2.2G bases, 689.9Mb
Run# of Spots# of BasesSizePublished
SRR153284657,291,7722.2G689.9Mb2022-08-01

ID:
15548120

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