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SRX256723: S. dulcamara response of adventitious root primordia to flooding Sd-pr_contr_rep3
1 ILLUMINA (Illumina HiSeq 2000) run: 56.5M spots, 2.8G bases, 1.6Gb downloads

Design: Total RNA was isolated using the Plant RNeasy kit (Invitrogen) and treated with DNase. mRNA was purified and cDNA samples were prepared and sequenced on the Illumina HiSeq 2000 platform without prior normalisation.
Submitted by: ITALIAN AGRICULTURAL RESEARCH COUNCIL RESEARCH, CENTRE FOR VEGETABLE CROPS (ITALIAN AGRICULTURAL RESEARCH COUNCIL RESEARCH, CE)
Study: Solanum dulcamara Transcriptome or Gene expression
show Abstracthide Abstract
We have employed NGS to speed up research on this non-model species. We performed a large-scale characterization of the S. dulcamara transcriptome, identified transcript-based SNP and SSR markers and carried out gene expression analysis in order to understand flooding-induced activation of adventitious root primordia, presumed to be adaptive to wet habitats.
Sample: Generic sample from Solanum dulcamara
SAMN01990748 • SRS405279 • All experiments • All runs
Library:
Name: Sd-pr_contr_rep3
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: unspecified
Layout: SINGLE
Spot descriptor:
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Runs: 1 run, 56.5M spots, 2.8G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR79932156,536,2052.8G1.6Gb2015-07-22

ID:
358789

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