Whole genome shotgun sequencing of Salmonella enterica subsp. serovar... - SRA

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SRX335091: Whole genome shotgun sequencing of Salmonella enterica subsp. serovar str. FL_EPI-015 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.5M spots, 517.8M bases, 296.4Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: Florida Department of Health, University of Florida

PRJNA183848 • SRP028812 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: Generic sample from Salmonella enterica

SAMN01924570 • SRS470210 • All experiments • All runs

Organism: Salmonella enterica

Library:

Name: Salmonella enterica str. CFSAN003526_01 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumia Nextera XT library created for Salmonella enterica subsp. serovar str. FL_EPI-015.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	3.2.1

Runs: 1 run, 1.5M spots, 517.8M bases, 296.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR952369	1,490,330	517.8M	296.4Mb	2013-08-14

ID:: 470293

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