Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX360282: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Thompson str. NY_FSL S10-1031 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 547.4M bases, 281.6Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center

PRJNA183850 • SRP028607 • All experiments • All runs

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Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses

Sample: Pathogen bacterial, environmental sample from Salmonella enterica

SAMN01902458 • SRS487494 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Thompson

Library:

Name: Salmonella enterica str. CFSAN002905_01 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Thompson str. NY_FSL S10-1031.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.17.28

Runs: 1 run, 1.2M spots, 547.4M bases, 281.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR1002808	1,188,243	547.4M	281.6Mb	2013-09-25

ID:: 509487

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