U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from BioSample

SRX332843: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Newport str. NY_FSL C7-325 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 591.8M bases, 318.8Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr Project: NY State Dept. of Health, Wadsworth Center
show Abstracthide Abstract
Currently encompasses whole genome sequencing of cultured pathogens as part of a surveillance project for the rapid detection of outbreaks of foodborne illnesses
Sample: Pathogen bacterial, environmental sample from Salmonella enterica
SAMN01902423 • SRS468276 • All experiments • All runs
Library:
Name: Salmonella enterica str. CFSAN002910_01 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumia Nextera XT library created for Salmonella enterica str. CFSAN002910_01.
Spot descriptor:
forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA3.2.1
Runs: 1 run, 1.2M spots, 591.8M bases, 318.8Mb
Run# of Spots# of BasesSizePublished
SRR9493641,217,877591.8M318.8Mb2013-08-08

ID:
467861

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...