GSM5091871: Oil + Hypoxia 1 48 h; Cyprinodon variegatus; RNA-Seq - SRA

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SRX10127654: GSM5091871: Oil + Hypoxia 1 48 h; Cyprinodon variegatus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 36.5M spots, 11G bases, 3.4Gb downloads

Submitted by: NCBI (GEO)

Study: RNA seq of larval Cyprinidon variegatus exposed to oil, hypoxia or both for 48 hr, followed by 48 hrs depuration

PRJNA702804 • SRP307020 • All experiments • All runs

show Abstracthide Abstract

The objective of this project was to expose larval Cyprinodon variegatus to oil/hypoxia stressors for 48 hrs, then allow 48 hours of recovery and depuration. Overall design: Transcriptional profiles were defined at each timepoint to identify recovery processeranscriptional profiles were also compared with genomic methylation patterns to ascertain to correlation between methylation and transcription..

Sample: Oil + Hypoxia 1 48 h

SAMN17980296 • SRS8282062 • All experiments • All runs

Organism: Cyprinodon variegatus

Library:

Instrument: Illumina NovaSeq 6000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Qiagen RNEasy, according to manufacturer's protocol NuGen mRNA Library Construction, sequenced on Illumina NovaSEQ to generate 2 x 150 bp reads

Experiment attributes:

GEO Accession: GSM5091871

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 36.5M spots, 11G bases, 3.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR13740522	36,509,700	11G	3.4Gb	2021-02-20

ID:: 13255230

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