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SRX9518250: Nanopore sequencing of Leucophenga varia: whole adult flies, male
1 OXFORD_NANOPORE (MinION) run: 5.2M spots, 8.3G bases, 7.1Gb downloads

Design: Nanopore library was prepared using a bead-free version of the SQK-LSK109 kit protocol and sequenced on an R9.4.1 rev D flow cell. Basecalling was performed using ONT Guppy in high-accuracy mode and only reads passing the default quality filter were kept.
Submitted by: Stanford University
Study: Nanopore-based assembly of many drosophilid genomes
show Abstracthide Abstract
This work is a collaborative project aiming to broaden the scope of genomic resources for studying evolution in the model group Drosophilidae (fruit flies). Samples were obtained from a variety of sources ranging from inbred laboratory strains to wild samples. DNA was extracted from pools of flies. A Nanopore and Illumina hybrid assembly approach was taken to build the genome assemblies. Initial assemblies were generated from Nanopore sequences, polished with Nanopore reads, and finally with paired-end Illumina reads.
Sample:
SAMN16729689 • SRS7725904 • All experiments • All runs
Library:
Name: lvar_r941
Instrument: MinION
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 5.2M spots, 8.3G bases, 7.1Gb
Run# of Spots# of BasesSizePublished
SRR130706085,217,6208.3G7.1Gb2020-12-02

ID:
12438038

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