16S rRNA gene amplicon sequencing of Mouth swab from patient with mul... - SRA

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SRX9149145: 16S rRNA gene amplicon sequencing of Mouth swab from patient with multiple myeloma obtained at baseline at start of relapse therapy (17/002) [JMF-2001-4-0038B]
1 ILLUMINA (Illumina MiSeq) run: 58,797 spots, 29.9M bases, 14.1Mb downloads

Design: Mouths swabs were obtained using 4N6FLOQSwabs and stored at -20C within 2 hours of collection. Total DNA was extracted using the QIAamp DNA Mini Kit. The V3-V4 region of bacterial 16S rRNA gene was amplified using 341F and 785R primers (https://www.ncbi.nlm.nih.gov/pubmed/26236305).

Submitted by: Joint Microbiome Facility (JMF)

Study: Oral microbiome in patients with relapsed/refractory multiple myeloma treated with ixazomib-based therapy

PRJNA664320 • SRP283421 • All experiments • All runs

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Alterations in the human microbiome have been linked to several malignant diseases. Here, we investigated the oral microbiome of 90 patients with relapsed/refractory multiple myeloma (MM) treated with Ixazomib-Thalidomide-Dexamethasone. Sequencing was performed at the Joint Microbiome Facility of the Medical University of Vienna and the University of Vienna under the project ID JMF-2001-4.

Sample: Mouth swab from patient with multiple myeloma obtained at baseline at start of relapse therapy (17/002)

SAMN16205885 • SRS7389985 • All experiments • All runs

Organism: human oral metagenome

Library:

Name: JMF-2001-4-0038B

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 58,797 spots, 29.9M bases, 14.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR12668612	58,797	29.9M	14.1Mb	2021-10-31

ID:: 11921469

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