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SRX7141122: GSM4160368: T4.RNA-seq.AD; Trichinella pseudospiralis; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 32.3M spots, 9.7G bases, 3Gb downloads

Submitted by: NCBI (GEO)
Study: 12 transcriptomes of three life stages using RNA-Seq
show Abstracthide Abstract
As DNA methylation can modulate gene expression, we then focused our analysis on changes of methylation at the host taxonomic level, that is between encapsulated and non-encapsulated clade, and within non-encapsulated clade, to reveal epigenetic regulation on transcriptomes from Ad and ML stages. By comparing DNA methylation patterns between different host classes of species, we found a fraction of parasitism-related genes under epigenetic regulation, such as G-protein-coupled receptor, DNaseII and ligand-gated chloride channel. Overall design: We report 12 transcriptomes of three life stages using RNA-Seq
Sample: T4.RNA-seq.AD
SAMN13283360 • SRS5649263 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA of T. spiralis (Ad, NBL and ML) was purified using Trizol reagent (Invitrogen, CA, USA) according to the manufacturer's instructions. To degrade any possible DNA contamination, the total RNA samples were dissolved in diethylpyrocarbonate (DEPC)-treated water and treated with DNaseI. NanoDrop 2000 (Thermo Scientific CA, USA) was then used to assess the quantity and quality of the total mRNA enriched using oligo (dT) magnetic beads. Paired-end sequencing libraries with insert size of 300 bp were conducted on the HiSeq 2,500 platform following the Illumina's protocols.
Experiment attributes:
GEO Accession: GSM4160368
Links:
Runs: 1 run, 32.3M spots, 9.7G bases, 3Gb
Run# of Spots# of BasesSizePublished
SRR1044641132,253,8419.7G3Gb2020-06-01

ID:
9386065

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