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ERX3192623: HiSeq X Ten paired end sequencing
1 ILLUMINA (HiSeq X Ten) run: 2.6M spots, 780.6M bases, 178.2Mb downloads

Design: Illumina sequencing of library DN503106K:G9, constructed from sample accession ERS2032814 for study accession ERP104607. This is part of an Illumina multiplexed sequencing run (25052_8). This submission includes reads tagged with the sequence GTGTCCTT.
Submitted by: Wellcome Sanger Institute
Study: Klebsiella_pneumoniae_sequencing_Giani_
show Abstracthide Abstract
The collection of isolates that we would like to sequence consists in 163 K. pneumoniae isolates collected in the framework of an Italian survey on carbapenem non-susceptible K. pneumoniae promoted by the Antibiotic-Resistance-Istituto Superiore di Sanità surveillance network. The survey involved 24 different centers distributed across the country. Each center collected all consecutive non-replicate clinical isolates of K. pneumoniae from blood or cerebrospinal fluid (CSF) with MICs >1 mg/L for meropenem and/or imipenem during the period March-July 2016. A preliminary characterization by PCR of showed that the collection is represented by 152 blaKPC 4 blaVIM, 3 blaOXA-48 positive isolates. Sequencing all collected isolates should be useful to: i) obtain data about possible additional mechanisms of resistance, ii) obtain data about the clonality of the KPC-producing isolates; iii) to compare this recent collection with older collections, to obtain new insights about the evolution of the CC258 population.
Sample: Kpngiani7132528
SAMEA104414872 • ERS2032814 • All experiments • All runs
Library:
Name: DN503106K:G9
Instrument: HiSeq X Ten
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Standard
Runs: 1 run, 2.6M spots, 780.6M bases, 178.2Mb
Run# of Spots# of BasesSizePublished
ERR31646752,584,663780.6M178.2Mb2019-02-20

ID:
7301470

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