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DRX137866: Illumina MiSeq paired end sequencing of SAMD00133813
1 ILLUMINA (Illumina MiSeq) run: 550,450 spots, 321.1M bases, 163.5Mb downloads

Submitted by: National Institute of Infectious Diseases - Japan (NIID)
Study: Outbreak in nursery caused by enterohemorrhagic Escherichia coli O121 and tranfer of ESBL plasmid
PRJDB7237 • DRP004595 • All experiments • All runs
show Abstracthide Abstract
An outbreak caused by enterohemorrhagic Escherichia coli O121 was detected in two nurseries. The O121 isolates were clonal according to whole genome sequence analysis, while only the isolates from one nursery had ESBL plasmid. We have obtained ESBL-producing E. coli O86 from one of the patients, suggesting the transfer of ESBL plasmid.
Sample: MiSeq reads of Escherichia coli O121 EC12043
SAMD00133813 • DRS080004 • All experiments • All runs
Organism: Escherichia coli O121
Library:
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: PAIRED
Construction protocol:
Spot descriptor:
1  forward251  reverse

Runs: 1 run, 550,450 spots, 321.1M bases, 163.5Mb
Run# of Spots# of BasesSizePublished
DRR147074550,450321.1M163.5Mb2018-11-22

ID:
6809688

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