Illumina MiSeq paired end sequencing of SAMD00133810 - SRA

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DRX137863: Illumina MiSeq paired end sequencing of SAMD00133810
1 ILLUMINA (Illumina MiSeq) run: 383,047 spots, 223M bases, 112.9Mb downloads

Submitted by: National Institute of Infectious Diseases - Japan (NIID)

Study: Outbreak in nursery caused by enterohemorrhagic Escherichia coli O121 and tranfer of ESBL plasmid

PRJDB7237 • DRP004595 • All experiments • All runs

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An outbreak caused by enterohemorrhagic Escherichia coli O121 was detected in two nurseries. The O121 isolates were clonal according to whole genome sequence analysis, while only the isolates from one nursery had ESBL plasmid. We have obtained ESBL-producing E. coli O86 from one of the patients, suggesting the transfer of ESBL plasmid.

Sample: MiSeq reads of Escherichia coli O121 EC12040

SAMD00133810 • DRS080001 • All experiments • All runs

Organism: Escherichia coli O121

Library:

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: size fractionation

Layout: PAIRED

Construction protocol:

Spot descriptor:

1 forward251 reverse

Runs: 1 run, 383,047 spots, 223M bases, 112.9Mb

Run	# of Spots	# of Bases	Size	Published
DRR147071	383,047	223M	112.9Mb	2018-11-22

ID:: 6809685

SRA

Sequence Read Archive

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