Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

Links from BioProject

SRX567396: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-318707' containing sample 'VET1950S' from individual 'VET0083'
4 ILLUMINA (Illumina HiSeq 2000) runs: 15.6M spots, 3.2G bases, 1.5Gb downloads

UUID: c8edddf3-082c-4bf1-b439-5755a818c8d0

Design: Illumina sequencing of Staphylococcus aureus VET1950S via random selection

Submitted by: Broad Institute (BI)

Study: MRSA ST398

PRJNA228903 • SRP042834 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus VET1950S

SAMN02404393 • SRS626902 • All experiments • All runs

Organism: Staphylococcus aureus VET1950S

Library:

Name: Pond-318707

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 471468.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:5CLEB

material_type: DNA:DNA Somatic

product_order: PDO-2557

product_part_number: P-WG-0004

project: G55301

research_project: RP-513

root_sample_id: SM-4Q55T

sample_id: SM-5CLEB

work_request: 39368

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2014-02-01 14:58:37.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 4 runs, 15.6M spots, 3.2G bases, 1.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR1329269	3,870,178	781.8M	376.8Mb	2014-06-03
SRR1342145	3,900,132	787.8M	380.8Mb	2014-06-05
SRR1342170	3,900,264	787.9M	383.3Mb	2014-06-05
SRR1346375	3,931,331	794.1M	381.9Mb	2014-06-06

ID:: 810213

SRA

Sequence Read Archive

Result Filters

Send to:

Links from BioProject

Supplemental Content

Related information

Recent activity