Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX375574: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-281270' containing sample 'Staphylococcus aureus M1172'
2 ILLUMINA (Illumina HiSeq 2000) runs: 4.9M spots, 986.2M bases, 443.3Mb downloads

UUID: 41239f1a-32a3-4962-991a-32e6dc74eb38

Design: Illumina sequencing of Staphylococcus aureus M1172 via random selection

Submitted by: Broad Institute (BI)

Study: MRSA Surveillance II

PRJNA220032 • SRP032888 • All experiments • All runs

Sample: Generic sample from Staphylococcus aureus M1172

SAMN02360839 • SRS501280 • All experiments • All runs

Organism: Staphylococcus aureus M1172

Library:

Name: Pond-281270

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 13 attributes...) (hide...)

analysis_type: AssemblyWithReference

data_type: WGS

gssr_id: 407677.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:4WBG3

material_type: DNA:DNA Somatic

product_order: PDO-2122

product_part_number: P-WG-0004

project: G48529

research_project: RP-433

root_sample_id: SM-4CVUU

sample_id: SM-4WBG3

work_request: 38311

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-11-04 13:06:09.0	GAPipeline	RTA1.17.21.3	Sequencer Application 2.1.35.0

Runs: 2 runs, 4.9M spots, 986.2M bases, 443.3Mb

Run	# of Spots	# of Bases	Size	Published
SRR1028104	2,403,558	485.5M	217Mb	2013-11-11
SRR1043851	2,478,726	500.7M	226.3Mb	2013-12-05

ID:: 537470

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