SNP Links for Protein (Select 23510445) - SNP

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Links from Protein

Items: 1 to 20 of 224

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Select item 14785849321.

rs1478584932 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGTGAGT>- [Show Flanks]
Chromosome:: 9:114805860 (GRCh38)
9:117568140 (GRCh37)
Canonical SPDI:: NC_000009.12:114805857:GTGGTGAGT:GT
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,genic_upstream_transcript_variant,frameshift_variant
Validated:: by frequency
MAF:: -=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.114805860_114805866del, NC_000009.11:g.117568140_117568146del, NG_011488.2:g.5265_5271del, NM_005118.4:c.149_155del, NM_005118.3:c.149_155del, NP_005109.2:p.Leu50fs

Select item 14771774702.

rs1477177470 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:114790780 (GRCh38)
9:117553060 (GRCh37)
Canonical SPDI:: NC_000009.12:114790779:T:A
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
HGVS:: NC_000009.12:g.114790780T>A, NC_000009.11:g.117553060T>A, NG_011488.2:g.20349A>T, NM_005118.4:c.428A>T, NM_005118.3:c.428A>T, NM_001204344.1:c.251A>T, NP_005109.2:p.Glu143Val, NP_001191273.1:p.Glu84Val

Select item 14703059013.

rs1470305901 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:114805890 (GRCh38)
9:117568170 (GRCh37)
Canonical SPDI:: NC_000009.12:114805889:C:T
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,genic_upstream_transcript_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000036/5 (GnomAD)
T=0.000038/10 (TOPMED)
HGVS:: NC_000009.12:g.114805890C>T, NC_000009.11:g.117568170C>T, NG_011488.2:g.5239G>A, NM_005118.4:c.123G>A, NM_005118.3:c.123G>A

Select item 14696764764.

rs1469676476 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:114790675 (GRCh38)
9:117552955 (GRCh37)
Canonical SPDI:: NC_000009.12:114790674:G:C
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000028/1 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.114790675G>C, NC_000009.11:g.117552955G>C, NG_011488.2:g.20454C>G, NM_005118.4:c.533C>G, NM_005118.3:c.533C>G, NM_001204344.1:c.356C>G, NP_005109.2:p.Thr178Ser, NP_001191273.1:p.Thr119Ser

Select item 14681353905.

rs1468135390 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:114790654 (GRCh38)
9:117552934 (GRCh37)
Canonical SPDI:: NC_000009.12:114790653:G:C
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.114790654G>C, NC_000009.11:g.117552934G>C, NG_011488.2:g.20475C>G, NM_005118.4:c.554C>G, NM_005118.3:c.554C>G, NM_001204344.1:c.377C>G, NP_005109.2:p.Thr185Arg, NP_001191273.1:p.Thr126Arg

Select item 14680266476.

rs1468026647 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:114792443 (GRCh38)
9:117554723 (GRCh37)
Canonical SPDI:: NC_000009.12:114792442:T:C
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.114792443T>C, NC_000009.11:g.117554723T>C, NG_011488.2:g.18686A>G, NM_005118.4:c.265A>G, NM_005118.3:c.265A>G, NM_001204344.1:c.88A>G, NP_005109.2:p.Arg89Gly, NP_001191273.1:p.Arg30Gly

Select item 14631365567.

rs1463136556 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:114790545 (GRCh38)
9:117552825 (GRCh37)
Canonical SPDI:: NC_000009.12:114790544:T:G
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.0002/1 (ALFA)
G=0.0002/1 (Estonian)
HGVS:: NC_000009.12:g.114790545T>G, NC_000009.11:g.117552825T>G, NG_011488.2:g.20584A>C, NM_005118.4:c.663A>C, NM_005118.3:c.663A>C, NM_001204344.1:c.486A>C, NP_005109.2:p.Gln221His, NP_001191273.1:p.Gln162His

Select item 14611200168.

rs1461120016 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 9:114792453 (GRCh38)
9:117554733 (GRCh37)
Canonical SPDI:: NC_000009.12:114792452:A:C,NC_000009.12:114792452:A:G
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,stop_gained,missense_variant,synonymous_variant
HGVS:: NC_000009.12:g.114792453A>C, NC_000009.12:g.114792453A>G, NC_000009.11:g.117554733A>C, NC_000009.11:g.117554733A>G, NG_011488.2:g.18676T>G, NG_011488.2:g.18676T>C, NM_005118.4:c.255T>G, NM_005118.4:c.255T>C, NM_005118.3:c.255T>G, NM_005118.3:c.255T>C, NM_001204344.1:c.78T>G, NM_001204344.1:c.78T>C, NP_005109.2:p.Tyr85Ter, NP_001191273.1:p.Asp26Glu

Select item 14569528239.

rs1456952823 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:114790800 (GRCh38)
9:117553080 (GRCh37)
Canonical SPDI:: NC_000009.12:114790799:G:A
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.114790800G>A, NC_000009.11:g.117553080G>A, NG_011488.2:g.20329C>T, NM_005118.4:c.408C>T, NM_005118.3:c.408C>T, NM_001204344.1:c.231C>T

Select item 144642559310.

rs1446425593 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:114793533 (GRCh38)
9:117555813 (GRCh37)
Canonical SPDI:: NC_000009.12:114793532:C:A
Gene:: TNFSF15 (Varview)
Functional Consequence:: missense_variant,upstream_transcript_variant,coding_sequence_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.114793533C>A, NC_000009.11:g.117555813C>A, NG_011488.2:g.17596G>T, NM_005118.4:c.246G>T, NM_005118.3:c.246G>T, NP_005109.2:p.Gln82His

Select item 144536254111.

rs1445362541 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:114790513 (GRCh38)
9:117552793 (GRCh37)
Canonical SPDI:: NC_000009.12:114790512:T:C
Gene:: TNFSF15 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.114790513T>C, NC_000009.11:g.117552793T>C, NG_011488.2:g.20616A>G, NM_005118.4:c.695A>G, NM_005118.3:c.695A>G, NM_001204344.1:c.518A>G, NP_005109.2:p.Asp232Gly, NP_001191273.1:p.Asp173Gly

Select item 144446315312.

rs1444463153 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:114790701 (GRCh38)
9:117552981 (GRCh37)
Canonical SPDI:: NC_000009.12:114790700:G:T
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (GnomAD_exomes)
T=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.114790701G>T, NC_000009.11:g.117552981G>T, NG_011488.2:g.20428C>A, NM_005118.4:c.507C>A, NM_005118.3:c.507C>A, NM_001204344.1:c.330C>A

Select item 143795553813.

rs1437955538 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:114805812 (GRCh38)
9:117568092 (GRCh37)
Canonical SPDI:: NC_000009.12:114805811:C:T
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.114805812C>T, NC_000009.11:g.117568092C>T, NG_011488.2:g.5317G>A, NM_005118.4:c.201G>A, NM_005118.3:c.201G>A

Select item 142933718614.

rs1429337186 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:114805959 (GRCh38)
9:117568239 (GRCh37)
Canonical SPDI:: NC_000009.12:114805958:C:T
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,genic_upstream_transcript_variant,synonymous_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.114805959C>T, NC_000009.11:g.117568239C>T, NG_011488.2:g.5170G>A, NM_005118.4:c.54G>A, NM_005118.3:c.54G>A

Select item 142857471315.

rs1428574713 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 9:114792442 (GRCh38)
9:117554722 (GRCh37)
Canonical SPDI:: NC_000009.12:114792441:C:A,NC_000009.12:114792441:C:G
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000198/3 (ALFA)
G=0.000021/3 (GnomAD)
G=0.00067/3 (Estonian)
HGVS:: NC_000009.12:g.114792442C>A, NC_000009.12:g.114792442C>G, NC_000009.11:g.117554722C>A, NC_000009.11:g.117554722C>G, NG_011488.2:g.18687G>T, NG_011488.2:g.18687G>C, NM_005118.4:c.266G>T, NM_005118.4:c.266G>C, NM_005118.3:c.266G>T, NM_005118.3:c.266G>C, NM_001204344.1:c.89G>T, NM_001204344.1:c.89G>C, NP_005109.2:p.Arg89Ile, NP_005109.2:p.Arg89Thr, NP_001191273.1:p.Arg30Ile, NP_001191273.1:p.Arg30Thr

Select item 142706689016.

rs1427066890 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 9:114805935 (GRCh38)
9:117568215 (GRCh37)
Canonical SPDI:: NC_000009.12:114805934:G:C,NC_000009.12:114805934:G:T
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,genic_upstream_transcript_variant,synonymous_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.114805935G>C, NC_000009.12:g.114805935G>T, NC_000009.11:g.117568215G>C, NC_000009.11:g.117568215G>T, NG_011488.2:g.5194C>G, NG_011488.2:g.5194C>A, NM_005118.4:c.78C>G, NM_005118.4:c.78C>A, NM_005118.3:c.78C>G, NM_005118.3:c.78C>A

Select item 141669483917.

rs1416694839 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:114790773 (GRCh38)
9:117553053 (GRCh37)
Canonical SPDI:: NC_000009.12:114790772:T:C
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,synonymous_variant
Validated:: by frequency,by cluster
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.114790773T>C, NC_000009.11:g.117553053T>C, NG_011488.2:g.20356A>G, NM_005118.4:c.435A>G, NM_005118.3:c.435A>G, NM_001204344.1:c.258A>G

Select item 141396731318.

rs1413967313 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:114790539 (GRCh38)
9:117552819 (GRCh37)
Canonical SPDI:: NC_000009.12:114790538:C:A,NC_000009.12:114790538:C:T
Gene:: TNFSF15 (Varview)
Functional Consequence:: synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.114790539C>A, NC_000009.12:g.114790539C>T, NC_000009.11:g.117552819C>A, NC_000009.11:g.117552819C>T, NG_011488.2:g.20590G>T, NG_011488.2:g.20590G>A, NM_005118.4:c.669G>T, NM_005118.4:c.669G>A, NM_005118.3:c.669G>T, NM_005118.3:c.669G>A, NM_001204344.1:c.492G>T, NM_001204344.1:c.492G>A

Select item 140869240419.

rs1408692404 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:114790694 (GRCh38)
9:117552974 (GRCh37)
Canonical SPDI:: NC_000009.12:114790693:T:C
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.114790694T>C, NC_000009.11:g.117552974T>C, NG_011488.2:g.20435A>G, NM_005118.4:c.514A>G, NM_005118.3:c.514A>G, NM_001204344.1:c.337A>G, NP_005109.2:p.Asn172Asp, NP_001191273.1:p.Asn113Asp

Select item 140322681320.

rs1403226813 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 9:114790814 (GRCh38)
9:117553094 (GRCh37)
Canonical SPDI:: NC_000009.12:114790813:T:A,NC_000009.12:114790813:T:C
Gene:: TNFSF15 (Varview)
Functional Consequence:: coding_sequence_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000157/22 (GnomAD)
C=0.000185/49 (TOPMED)
HGVS:: NC_000009.12:g.114790814T>A, NC_000009.12:g.114790814T>C, NC_000009.11:g.117553094T>A, NC_000009.11:g.117553094T>C, NG_011488.2:g.20315A>T, NG_011488.2:g.20315A>G, NM_005118.4:c.394A>T, NM_005118.4:c.394A>G, NM_005118.3:c.394A>T, NM_005118.3:c.394A>G, NM_001204344.1:c.217A>T, NM_001204344.1:c.217A>G, NP_005109.2:p.Met132Leu, NP_005109.2:p.Met132Val, NP_001191273.1:p.Met73Leu, NP_001191273.1:p.Met73Val

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