SNP Links for Nucleotide (Select 906847388) - SNP

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:91990340 (GRCh38)
12:92384116 (GRCh37)
Canonical SPDI:: NC_000012.12:91990339:A:G
Gene:: LINC01619 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.91990340A>G, NC_000012.11:g.92384116A>G, NR_046160.2:n.408T>C, NR_046160.1:n.248T>C, NR_046159.2:n.246T>C, NR_046159.1:n.246T>C

Select item 147285376912.

rs1472853769 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 12:91986331 (GRCh38)
12:92380107 (GRCh37)
Canonical SPDI:: NC_000012.12:91986330:C:
Gene:: LINC01619 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000054/1 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000223/1 (Estonian)
HGVS:: NC_000012.12:g.91986331del, NC_000012.11:g.92380107del, NR_046160.2:n.1012del, NR_046160.1:n.852del, NR_046159.2:n.850del, NR_046159.1:n.850del, NR_132339.1:n.1088del, NR_132341.1:n.960del, NR_132340.1:n.937del, NM_001256373.1:c.*389del, NM_001256375.1:c.*351del, NM_001256374.1:c.*295del

Select item 147090348513.

rs1470903485 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 12:91987556 (GRCh38)
12:92381332 (GRCh37)
Canonical SPDI:: NC_000012.12:91987555:A:G
Gene:: LINC01619 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.91987556A>G, NC_000012.11:g.92381332A>G, NR_046160.2:n.645T>C, NR_046160.1:n.485T>C, NR_046159.2:n.483T>C, NR_046159.1:n.483T>C, NR_132339.1:n.721T>C, NR_132341.1:n.570T>C, NR_132340.1:n.570T>C, NM_001256373.1:c.*22T>C, NM_001256375.1:c.219T>C, NM_001256374.1:c.219T>C

Select item 147056086714.

rs1470560867 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:91986067 (GRCh38)
12:92379843 (GRCh37)
Canonical SPDI:: NC_000012.12:91986066:C:T
Gene:: LINC01619 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.91986067C>T, NC_000012.11:g.92379843C>T, NR_046160.2:n.1276G>A, NR_046160.1:n.1116G>A, NR_046159.2:n.1114G>A, NR_046159.1:n.1114G>A, NR_132339.1:n.1352G>A, NR_132341.1:n.1224G>A, NR_132340.1:n.1201G>A, NM_001256373.1:c.*653G>A, NM_001256375.1:c.*615G>A, NM_001256374.1:c.*559G>A

Select item 146674452215.

rs1466744522 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:91985648 (GRCh38)
12:92379424 (GRCh37)
Canonical SPDI:: NC_000012.12:91985647:T:C
Gene:: LINC01619 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.91985648T>C, NC_000012.11:g.92379424T>C, NR_046160.2:n.1695A>G, NR_046160.1:n.1535A>G, NR_046159.2:n.1533A>G, NR_046159.1:n.1533A>G, NR_132339.1:n.1771A>G, NR_132341.1:n.1643A>G, NR_132340.1:n.1620A>G, NM_001256373.1:c.*1072A>G, NM_001256375.1:c.*1034A>G, NM_001256374.1:c.*978A>G

Select item 146657706516.

rs1466577065 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 12:91985779 (GRCh38)
12:92379555 (GRCh37)
Canonical SPDI:: NC_000012.12:91985778:C:G,NC_000012.12:91985778:C:T
Gene:: LINC01619 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.91985779C>G, NC_000012.12:g.91985779C>T, NC_000012.11:g.92379555C>G, NC_000012.11:g.92379555C>T, NR_046160.2:n.1564G>C, NR_046160.2:n.1564G>A, NR_046160.1:n.1404G>C, NR_046160.1:n.1404G>A, NR_046159.2:n.1402G>C, NR_046159.2:n.1402G>A, NR_046159.1:n.1402G>C, NR_046159.1:n.1402G>A, NR_132339.1:n.1640G>C, NR_132339.1:n.1640G>A, NR_132341.1:n.1512G>C, NR_132341.1:n.1512G>A, NR_132340.1:n.1489G>C, NR_132340.1:n.1489G>A, NM_001256373.1:c.*941G>C, NM_001256373.1:c.*941G>A, NM_001256375.1:c.*903G>C, NM_001256375.1:c.*903G>A, NM_001256374.1:c.*847G>C, NM_001256374.1:c.*847G>A

Select item 146523776517.

rs1465237765 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 12:91986630 (GRCh38)
12:92380406 (GRCh37)
Canonical SPDI:: NC_000012.12:91986629:A:T
Gene:: LINC01619 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000016/2 (GnomAD_exomes)
HGVS:: NC_000012.12:g.91986630A>T, NC_000012.11:g.92380406A>T, NR_046160.2:n.713T>A, NR_046160.1:n.553T>A, NR_046159.2:n.551T>A, NR_046159.1:n.551T>A, NR_132339.1:n.789T>A, NR_132341.1:n.661T>A, NR_132340.1:n.638T>A, NM_001256373.1:c.*90T>A, NM_001256375.1:c.*52T>A, NM_001256374.1:c.287T>A

Select item 146519360118.

rs1465193601 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 12:91985294 (GRCh38)
12:92379070 (GRCh37)
Canonical SPDI:: NC_000012.12:91985293:T:A,NC_000012.12:91985293:T:G
Gene:: LINC01619 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000012.12:g.91985294T>A, NC_000012.12:g.91985294T>G, NC_000012.11:g.92379070T>A, NC_000012.11:g.92379070T>G, NR_046160.2:n.2049A>T, NR_046160.2:n.2049A>C, NR_046160.1:n.1889A>T, NR_046160.1:n.1889A>C, NR_046159.2:n.1887A>T, NR_046159.2:n.1887A>C, NR_046159.1:n.1887A>T, NR_046159.1:n.1887A>C, NR_132339.1:n.2125A>T, NR_132339.1:n.2125A>C, NR_132341.1:n.1997A>T, NR_132341.1:n.1997A>C, NR_132340.1:n.1974A>T, NR_132340.1:n.1974A>C, NM_001256373.1:c.*1426A>T, NM_001256373.1:c.*1426A>C, NM_001256375.1:c.*1388A>T, NM_001256375.1:c.*1388A>C, NM_001256374.1:c.*1332A>T, NM_001256374.1:c.*1332A>C

Select item 146432324819.

rs1464323248 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:91986163 (GRCh38)
12:92379939 (GRCh37)
Canonical SPDI:: NC_000012.12:91986162:T:C
Gene:: LINC01619 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000012.12:g.91986163T>C, NC_000012.11:g.92379939T>C, NR_046160.2:n.1180A>G, NR_046160.1:n.1020A>G, NR_046159.2:n.1018A>G, NR_046159.1:n.1018A>G, NR_132339.1:n.1256A>G, NR_132341.1:n.1128A>G, NR_132340.1:n.1105A>G, NM_001256373.1:c.*557A>G, NM_001256375.1:c.*519A>G, NM_001256374.1:c.*463A>G

Select item 146217000220.

rs1462170002 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 12:91987601 (GRCh38)
12:92381377 (GRCh37)
Canonical SPDI:: NC_000012.12:91987600:T:A
Gene:: LINC01619 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.91987601T>A, NC_000012.11:g.92381377T>A, NR_046160.2:n.600A>T, NR_046160.1:n.440A>T, NR_046159.2:n.438A>T, NR_046159.1:n.438A>T, NR_132339.1:n.676A>T, NR_132341.1:n.525A>T, NR_132340.1:n.525A>T, NM_001256373.1:c.325A>T, NM_001256375.1:c.174A>T, NM_001256374.1:c.174A>T

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