SNP Links for Nucleotide (Select 699114760) - SNP

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Select item 14912676291.

rs1491267629 [Homo sapiens]

Variant type:: INS
Alleles:: ->G [Show Flanks]
Chromosome:: 16:9449754 (GRCh38)
16:9543612 (GRCh37)
Canonical SPDI:: NC_000016.10:9449754::G
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000099/3 (GnomAD)
HGVS:: NC_000016.10:g.9449754_9449755insG, NC_000016.9:g.9543611_9543612insG, NR_126349.1:n.164_165insC

Select item 14911721862.

rs1491172186 has merged into rs34874780 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT,TTTTT [Show Flanks]
Chromosome:: 16:9449762 (GRCh38)
16:9543619 (GRCh37)
Canonical SPDI:: NC_000016.10:9449753:TTTTTTTTTTT:TTTTTTTT,NC_000016.10:9449753:TTTTTTTTTTT:TTTTTTTTT,NC_000016.10:9449753:TTTTTTTTTTT:TTTTTTTTTT,NC_000016.10:9449753:TTTTTTTTTTT:TTTTTTTTTTTT,NC_000016.10:9449753:TTTTTTTTTTT:TTTTTTTTTTTTT
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
T=0.437773/802 (Korea1K)
T=0.442398/1705 (ALSPAC)
T=0.442826/1642 (TWINSUK)
T=0.445487/2231 (1000Genomes)
T=0.45/18 (GENOME_DK)
T=0.461419/122133 (TOPMED)
T=0.481667/289 (NorthernSweden)
T=0.489065/8197 (TOMMO)
HGVS:: NC_000016.10:g.9449762_9449764del, NC_000016.10:g.9449763_9449764del, NC_000016.10:g.9449764del, NC_000016.10:g.9449764dup, NC_000016.10:g.9449763_9449764dup, NC_000016.9:g.9543619_9543621del, NC_000016.9:g.9543620_9543621del, NC_000016.9:g.9543621del, NC_000016.9:g.9543621dup, NC_000016.9:g.9543620_9543621dup, NR_126349.1:n.163_165del, NR_126349.1:n.164_165del, NR_126349.1:n.165del, NR_126349.1:n.165dup, NR_126349.1:n.164_165dup

Select item 14906349573.

rs1490634957 has merged into rs34874780 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTT>-,T,TT,TTTT,TTTTT [Show Flanks]
Chromosome:: 16:9449762 (GRCh38)
16:9543619 (GRCh37)
Canonical SPDI:: NC_000016.10:9449753:TTTTTTTTTTT:TTTTTTTT,NC_000016.10:9449753:TTTTTTTTTTT:TTTTTTTTT,NC_000016.10:9449753:TTTTTTTTTTT:TTTTTTTTTT,NC_000016.10:9449753:TTTTTTTTTTT:TTTTTTTTTTTT,NC_000016.10:9449753:TTTTTTTTTTT:TTTTTTTTTTTTT
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTT=0./0 (ALFA)
T=0.437773/802 (Korea1K)
T=0.442398/1705 (ALSPAC)
T=0.442826/1642 (TWINSUK)
T=0.445487/2231 (1000Genomes)
T=0.45/18 (GENOME_DK)
T=0.461419/122133 (TOPMED)
T=0.481667/289 (NorthernSweden)
T=0.489065/8197 (TOMMO)
HGVS:: NC_000016.10:g.9449762_9449764del, NC_000016.10:g.9449763_9449764del, NC_000016.10:g.9449764del, NC_000016.10:g.9449764dup, NC_000016.10:g.9449763_9449764dup, NC_000016.9:g.9543619_9543621del, NC_000016.9:g.9543620_9543621del, NC_000016.9:g.9543621del, NC_000016.9:g.9543621dup, NC_000016.9:g.9543620_9543621dup, NR_126349.1:n.163_165del, NR_126349.1:n.164_165del, NR_126349.1:n.165del, NR_126349.1:n.165dup, NR_126349.1:n.164_165dup

Select item 14890322394.

rs1489032239 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:9446038 (GRCh38)
16:9539895 (GRCh37)
Canonical SPDI:: NC_000016.10:9446037:G:A
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.9446038G>A, NC_000016.9:g.9539895G>A, NR_126349.1:n.423C>T

Select item 14852568655.

rs1485256865 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:9448028 (GRCh38)
16:9541885 (GRCh37)
Canonical SPDI:: NC_000016.10:9448027:A:G
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
HGVS:: NC_000016.10:g.9448028A>G, NC_000016.9:g.9541885A>G, NR_126349.1:n.214T>C

Select item 14808748226.

rs1480874822 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:9449794 (GRCh38)
16:9543651 (GRCh37)
Canonical SPDI:: NC_000016.10:9449793:G:C
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.9449794G>C, NC_000016.9:g.9543651G>C, NR_126349.1:n.125C>G

Select item 14705387477.

rs1470538747 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:9446217 (GRCh38)
16:9540074 (GRCh37)
Canonical SPDI:: NC_000016.10:9446216:C:G
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.9446217C>G, NC_000016.9:g.9540074C>G, NR_126349.1:n.346G>C

Select item 14693725738.

rs1469372573 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:9455456 (GRCh38)
16:9549313 (GRCh37)
Canonical SPDI:: NC_000016.10:9455455:C:G
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.9455456C>G, NC_000016.9:g.9549313C>G, NR_126349.1:n.50G>C

Select item 14570171999.

rs1457017199 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 16:9446058 (GRCh38)
16:9539915 (GRCh37)
Canonical SPDI:: NC_000016.10:9446057:A:G,NC_000016.10:9446057:A:T
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
T=0.000035/1 (TOMMO)
G=0.000042/11 (TOPMED)
HGVS:: NC_000016.10:g.9446058A>G, NC_000016.10:g.9446058A>T, NC_000016.9:g.9539915A>G, NC_000016.9:g.9539915A>T, NR_126349.1:n.403T>C, NR_126349.1:n.403T>A

Select item 144076717510.

rs1440767175 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:9446229 (GRCh38)
16:9540086 (GRCh37)
Canonical SPDI:: NC_000016.10:9446228:C:G
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.9446229C>G, NC_000016.9:g.9540086C>G, NR_126349.1:n.334G>C

Select item 143778248711.

rs1437782487 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:9449815 (GRCh38)
16:9543672 (GRCh37)
Canonical SPDI:: NC_000016.10:9449814:A:G
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
HGVS:: NC_000016.10:g.9449815A>G, NC_000016.9:g.9543672A>G, NR_126349.1:n.104T>C

Select item 143453711512.

rs1434537115 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:9447998 (GRCh38)
16:9541855 (GRCh37)
Canonical SPDI:: NC_000016.10:9447997:G:C
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.9447998G>C, NC_000016.9:g.9541855G>C, NR_126349.1:n.244C>G

Select item 142772641413.

rs1427726414 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:9449745 (GRCh38)
16:9543602 (GRCh37)
Canonical SPDI:: NC_000016.10:9449744:C:T
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000016.10:g.9449745C>T, NC_000016.9:g.9543602C>T, NR_126349.1:n.174G>A

Select item 141922263514.

rs1419222635 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:9455433 (GRCh38)
16:9549290 (GRCh37)
Canonical SPDI:: NC_000016.10:9455432:T:C
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.9455433T>C, NC_000016.9:g.9549290T>C, NR_126349.1:n.73A>G

Select item 141872075215.

rs1418720752 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:9455480 (GRCh38)
16:9549337 (GRCh37)
Canonical SPDI:: NC_000016.10:9455479:A:G
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.9455480A>G, NC_000016.9:g.9549337A>G, NR_126349.1:n.26T>C

Select item 141785593616.

rs1417855936 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:9448007 (GRCh38)
16:9541864 (GRCh37)
Canonical SPDI:: NC_000016.10:9448006:C:G
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000035/1 (TOMMO)
G=0.000342/1 (KOREAN)
HGVS:: NC_000016.10:g.9448007C>G, NC_000016.9:g.9541864C>G, NR_126349.1:n.235G>C

Select item 141332343917.

rs1413323439 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 16:9447937 (GRCh38)
16:9541794 (GRCh37)
Canonical SPDI:: NC_000016.10:9447936:A:C,NC_000016.10:9447936:A:G
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000021/3 (GnomAD)
HGVS:: NC_000016.10:g.9447937A>C, NC_000016.10:g.9447937A>G, NC_000016.9:g.9541794A>C, NC_000016.9:g.9541794A>G, NR_126349.1:n.305T>G, NR_126349.1:n.305T>C

Select item 141113509518.

rs1411135095 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:9446189 (GRCh38)
16:9540046 (GRCh37)
Canonical SPDI:: NC_000016.10:9446188:A:G
Gene:: LOC101927026 (Varview), LINC01195 (Varview), LINC01177 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,intron_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.9446189A>G, NC_000016.9:g.9540046A>G, NR_126349.1:n.374T>C

Select item 141060746819.

rs1410607468 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 16:9447984 (GRCh38)
16:9541841 (GRCh37)
Canonical SPDI:: NC_000016.10:9447982:ACA:A
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.9447984_9447985del, NC_000016.9:g.9541841_9541842del, NR_126349.1:n.258_259del

Select item 140508805420.

rs1405088054 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:9448011 (GRCh38)
16:9541868 (GRCh37)
Canonical SPDI:: NC_000016.10:9448010:C:T
Gene:: LOC101927026 (Varview), LINC01195 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.9448011C>T, NC_000016.9:g.9541868C>T, NR_126349.1:n.231G>A

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