SNP Links for Nucleotide (Select 646227362) - SNP

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Links from Nucleotide

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Select item 14855413771.

rs1485541377 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:94096828 (GRCh38)
10:95856585 (GRCh37)
Canonical SPDI:: NC_000010.11:94096827:C:A,NC_000010.11:94096827:C:T
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.94096828C>A, NC_000010.11:g.94096828C>T, NC_000010.10:g.95856585C>A, NC_000010.10:g.95856585C>T, NG_015799.1:g.107840C>A, NG_015799.1:g.107840C>T, NR_120616.1:n.385G>T, NR_120616.1:n.385G>A

Select item 14834536052.

rs1483453605 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:94108739 (GRCh38)
10:95868496 (GRCh37)
Canonical SPDI:: NC_000010.11:94108738:C:T
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview), LOC107984255 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000684/2 (KOREAN)
HGVS:: NC_000010.11:g.94108739C>T, NC_000010.10:g.95868496C>T, NG_015799.1:g.119751C>T, XR_001747554.3:n.1761C>T, NR_120615.1:n.56G>A, NR_120616.1:n.56G>A

Select item 14825385103.

rs1482538510 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:94096766 (GRCh38)
10:95856523 (GRCh37)
Canonical SPDI:: NC_000010.11:94096765:A:G
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000010.11:g.94096766A>G, NC_000010.10:g.95856523A>G, NG_015799.1:g.107778A>G, NR_120616.1:n.447T>C

Select item 14723260164.

rs1472326016 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 10:94104450 (GRCh38)
10:95864207 (GRCh37)
Canonical SPDI:: NC_000010.11:94104449:C:G,NC_000010.11:94104449:C:T
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.94104450C>G, NC_000010.11:g.94104450C>T, NC_000010.10:g.95864207C>G, NC_000010.10:g.95864207C>T, NG_015799.1:g.115462C>G, NG_015799.1:g.115462C>T, NR_120615.1:n.463G>C, NR_120615.1:n.463G>A, NR_120616.1:n.224G>C, NR_120616.1:n.224G>A

Select item 14707703955.

rs1470770395 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 10:94094687 (GRCh38)
10:95854444 (GRCh37)
Canonical SPDI:: NC_000010.11:94094686:T:A
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.94094687T>A, NC_000010.10:g.95854444T>A, NG_015799.1:g.105699T>A, NR_120616.1:n.623A>T

Select item 14667191576.

rs1466719157 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:94104434 (GRCh38)
10:95864191 (GRCh37)
Canonical SPDI:: NC_000010.11:94104433:C:T
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.94104434C>T, NC_000010.10:g.95864191C>T, NG_015799.1:g.115446C>T, NR_120615.1:n.479G>A, NR_120616.1:n.240G>A

Select item 14658280577.

rs1465828057 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:94082065 (GRCh38)
10:95841822 (GRCh37)
Canonical SPDI:: NC_000010.11:94082064:T:C
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.94082065T>C, NC_000010.10:g.95841822T>C, NG_015799.1:g.93077T>C, NR_120616.1:n.844A>G

Select item 14610454118.

rs1461045411 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:94088194 (GRCh38)
10:95847951 (GRCh37)
Canonical SPDI:: NC_000010.11:94088193:A:T
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.94088194A>T, NC_000010.10:g.95847951A>T, NG_015799.1:g.99206A>T, NR_120616.1:n.644T>A

Select item 14589819459.

rs1458981945 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 10:94108728 (GRCh38)
10:95868485 (GRCh37)
Canonical SPDI:: NC_000010.11:94108727:G:A,NC_000010.11:94108727:G:T
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview), LOC107984255 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.94108728G>A, NC_000010.11:g.94108728G>T, NC_000010.10:g.95868485G>A, NC_000010.10:g.95868485G>T, NG_015799.1:g.119740G>A, NG_015799.1:g.119740G>T, XR_001747554.3:n.1750G>A, XR_001747554.3:n.1750G>T, NR_120615.1:n.67C>T, NR_120615.1:n.67C>A, NR_120616.1:n.67C>T, NR_120616.1:n.67C>A

Select item 145620007010.

rs1456200070 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:94082158 (GRCh38)
10:95841915 (GRCh37)
Canonical SPDI:: NC_000010.11:94082157:T:C
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.94082158T>C, NC_000010.10:g.95841915T>C, NG_015799.1:g.93170T>C, NR_120616.1:n.751A>G

Select item 145499446411.

rs1454994464 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:94082206 (GRCh38)
10:95841963 (GRCh37)
Canonical SPDI:: NC_000010.11:94082205:C:T
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.94082206C>T, NC_000010.10:g.95841963C>T, NG_015799.1:g.93218C>T, NR_120616.1:n.703G>A

Select item 145156476112.

rs1451564761 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:94082199 (GRCh38)
10:95841956 (GRCh37)
Canonical SPDI:: NC_000010.11:94082198:A:T
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000023/6 (TOPMED)
HGVS:: NC_000010.11:g.94082199A>T, NC_000010.10:g.95841956A>T, NG_015799.1:g.93211A>T, NR_120616.1:n.710T>A

Select item 144683194213.

rs1446831942 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:94082151 (GRCh38)
10:95841908 (GRCh37)
Canonical SPDI:: NC_000010.11:94082150:G:A
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.94082151G>A, NC_000010.10:g.95841908G>A, NG_015799.1:g.93163G>A, NR_120616.1:n.758C>T

Select item 144630126814.

rs1446301268 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 10:94082136 (GRCh38)
10:95841893 (GRCh37)
Canonical SPDI:: NC_000010.11:94082135:A:G,NC_000010.11:94082135:A:T
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
T=0.000142/2 (TOMMO)
HGVS:: NC_000010.11:g.94082136A>G, NC_000010.11:g.94082136A>T, NC_000010.10:g.95841893A>G, NC_000010.10:g.95841893A>T, NG_015799.1:g.93148A>G, NG_015799.1:g.93148A>T, NR_120616.1:n.773T>C, NR_120616.1:n.773T>A

Select item 143441696315.

rs1434416963 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:94096429 (GRCh38)
10:95856186 (GRCh37)
Canonical SPDI:: NC_000010.11:94096428:G:A
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.94096429G>A, NC_000010.10:g.95856186G>A, NG_015799.1:g.107441G>A, NR_120616.1:n.475C>T

Select item 143148464816.

rs1431484648 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 10:94107780 (GRCh38)
10:95867537 (GRCh37)
Canonical SPDI:: NC_000010.11:94107779:G:A,NC_000010.11:94107779:G:C
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview), LOC107984255 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.94107780G>A, NC_000010.11:g.94107780G>C, NC_000010.10:g.95867537G>A, NC_000010.10:g.95867537G>C, NG_015799.1:g.118792G>A, NG_015799.1:g.118792G>C, XR_001747554.3:n.802G>A, XR_001747554.3:n.802G>C, NR_120616.1:n.168C>T, NR_120616.1:n.168C>G

Select item 143132775717.

rs1431327757 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:94104383 (GRCh38)
10:95864140 (GRCh37)
Canonical SPDI:: NC_000010.11:94104382:T:C
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.94104383T>C, NC_000010.10:g.95864140T>C, NG_015799.1:g.115395T>C, NR_120615.1:n.530A>G, NR_120616.1:n.291A>G

Select item 142896891118.

rs1428968911 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTTT>- [Show Flanks]
Chromosome:: 10:94081972 (GRCh38)
10:95841729 (GRCh37)
Canonical SPDI:: NC_000010.11:94081968:TTTGTTT:TTT
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TTT=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.94081972_94081975del, NC_000010.10:g.95841729_95841732del, NG_015799.1:g.92984_92987del, NR_120616.1:n.937_940del

Select item 142548866819.

rs1425488668 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:94081970 (GRCh38)
10:95841727 (GRCh37)
Canonical SPDI:: NC_000010.11:94081969:T:C
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,genic_upstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.94081970T>C, NC_000010.10:g.95841727T>C, NG_015799.1:g.92982T>C, NR_120616.1:n.939A>G

Select item 141571034020.

rs1415710340 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:94096874 (GRCh38)
10:95856631 (GRCh37)
Canonical SPDI:: NC_000010.11:94096873:G:A
Gene:: PLCE1 (Varview), PLCE1-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.94096874G>A, NC_000010.10:g.95856631G>A, NG_015799.1:g.107886G>A, NR_120616.1:n.339C>T