SNP Links for Nucleotide (Select 589269314) - SNP

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Links from Nucleotide

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Select item 14897826511.

rs1489782651 [Homo sapiens]

Variant type:: DELINS
Alleles:: AT>- [Show Flanks]
Chromosome:: 6:163052001 (GRCh38)
6:163473033 (GRCh37)
Canonical SPDI:: NC_000006.12:163051997:TATAT:TAT
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: TAT=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.163051999AT[1], NC_000006.11:g.163473031AT[1], NG_011525.1:g.329868AT[1], NR_110872.1:n.269TA[1], NR_110871.1:n.269TA[1]

Select item 14893979692.

rs1489397969 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 6:163042990 (GRCh38)
6:163464022 (GRCh37)
Canonical SPDI:: NC_000006.12:163042989:C:G
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.163042990C>G, NC_000006.11:g.163464022C>G, NG_011525.1:g.320859C>G, NR_110871.1:n.1290G>C

Select item 14852889833.

rs1485288983 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:163052008 (GRCh38)
6:163473040 (GRCh37)
Canonical SPDI:: NC_000006.12:163052007:G:A
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000594/11 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000114/16 (GnomAD)
A=0.002455/11 (Estonian)
HGVS:: NC_000006.12:g.163052008G>A, NC_000006.11:g.163473040G>A, NG_011525.1:g.329877G>A, NR_110872.1:n.262C>T, NR_110871.1:n.262C>T

Select item 14837927704.

rs1483792770 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:163051281 (GRCh38)
6:163472313 (GRCh37)
Canonical SPDI:: NC_000006.12:163051280:T:C
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.163051281T>C, NC_000006.11:g.163472313T>C, NG_011525.1:g.329150T>C, NR_110872.1:n.989A>G, NR_110871.1:n.989A>G

Select item 14819590475.

rs1481959047 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->AG
Chromosome:: no mapping
Canonical SPDI:

Select item 14812640486.

rs1481264048 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 6:163043024 (GRCh38)
6:163464056 (GRCh37)
Canonical SPDI:: NC_000006.12:163043023:A:G,NC_000006.12:163043023:A:T
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.163043024A>G, NC_000006.12:g.163043024A>T, NC_000006.11:g.163464056A>G, NC_000006.11:g.163464056A>T, NG_011525.1:g.320893A>G, NG_011525.1:g.320893A>T, NR_110871.1:n.1256T>C, NR_110871.1:n.1256T>A

Select item 14798745087.

rs1479874508 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:163051844 (GRCh38)
6:163472876 (GRCh37)
Canonical SPDI:: NC_000006.12:163051843:T:C
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000084/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000006.12:g.163051844T>C, NC_000006.11:g.163472876T>C, NG_011525.1:g.329713T>C, NR_110872.1:n.426A>G, NR_110871.1:n.426A>G

Select item 14765417788.

rs1476541778 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:163054095 (GRCh38)
6:163475127 (GRCh37)
Canonical SPDI:: NC_000006.12:163054094:G:A
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.163054095G>A, NC_000006.11:g.163475127G>A, NG_011525.1:g.331964G>A, NR_110872.1:n.67C>T, NR_110871.1:n.67C>T

Select item 14745687869.

rs1474568786 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 6:163051731 (GRCh38)
6:163472763 (GRCh37)
Canonical SPDI:: NC_000006.12:163051730:G:A
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.163051731G>A, NC_000006.11:g.163472763G>A, NG_011525.1:g.329600G>A, NR_110872.1:n.539C>T, NR_110871.1:n.539C>T

Select item 146900816210.

rs1469008162 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:163051506 (GRCh38)
6:163472538 (GRCh37)
Canonical SPDI:: NC_000006.12:163051505:A:G
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.163051506A>G, NC_000006.11:g.163472538A>G, NG_011525.1:g.329375A>G, NR_110872.1:n.764T>C, NR_110871.1:n.764T>C

Select item 146878095511.

rs1468780955 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 6:163046653 (GRCh38)
6:163467685 (GRCh37)
Canonical SPDI:: NC_000006.12:163046652:A:
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.163046653del, NC_000006.11:g.163467685del, NG_011525.1:g.324522del, NR_110871.1:n.1041del

Select item 146801423512.

rs1468014235 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:163051458 (GRCh38)
6:163472490 (GRCh37)
Canonical SPDI:: NC_000006.12:163051457:T:C
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000026/7 (TOPMED)
HGVS:: NC_000006.12:g.163051458T>C, NC_000006.11:g.163472490T>C, NG_011525.1:g.329327T>C, NR_110872.1:n.812A>G, NR_110871.1:n.812A>G

Select item 146632293413.

rs1466322934 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 6:163051476 (GRCh38)
6:163472508 (GRCh37)
Canonical SPDI:: NC_000006.12:163051475:T:G
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000006.12:g.163051476T>G, NC_000006.11:g.163472508T>G, NG_011525.1:g.329345T>G, NR_110872.1:n.794A>C, NR_110871.1:n.794A>C

Select item 145909660714.

rs1459096607 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:163046629 (GRCh38)
6:163467661 (GRCh37)
Canonical SPDI:: NC_000006.12:163046628:T:C
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.163046629T>C, NC_000006.11:g.163467661T>C, NG_011525.1:g.324498T>C, NR_110871.1:n.1065A>G

Select item 145527013815.

rs1455270138 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 6:163043124 (GRCh38)
6:163464156 (GRCh37)
Canonical SPDI:: NC_000006.12:163043123:G:A,NC_000006.12:163043123:G:C
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
C=0.000071/1 (TOMMO)
HGVS:: NC_000006.12:g.163043124G>A, NC_000006.12:g.163043124G>C, NC_000006.11:g.163464156G>A, NC_000006.11:g.163464156G>C, NG_011525.1:g.320993G>A, NG_011525.1:g.320993G>C, NR_110871.1:n.1156C>T, NR_110871.1:n.1156C>G

Select item 145387400716.

rs1453874007 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:163043150 (GRCh38)
6:163464182 (GRCh37)
Canonical SPDI:: NC_000006.12:163043149:T:C
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000006.12:g.163043150T>C, NC_000006.11:g.163464182T>C, NG_011525.1:g.321019T>C, NR_110871.1:n.1130A>G

Select item 145360480717.

rs1453604807 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 6:163051601 (GRCh38)
6:163472633 (GRCh37)
Canonical SPDI:: NC_000006.12:163051600:T:C
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.163051601T>C, NC_000006.11:g.163472633T>C, NG_011525.1:g.329470T>C, NR_110872.1:n.669A>G, NR_110871.1:n.669A>G

Select item 145200244218.

rs1452002442 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 6:163051395 (GRCh38)
6:163472427 (GRCh37)
Canonical SPDI:: NC_000006.12:163051394:G:A,NC_000006.12:163051394:G:C
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000006.12:g.163051395G>A, NC_000006.12:g.163051395G>C, NC_000006.11:g.163472427G>A, NC_000006.11:g.163472427G>C, NG_011525.1:g.329264G>A, NG_011525.1:g.329264G>C, NR_110872.1:n.875C>T, NR_110872.1:n.875C>G, NR_110871.1:n.875C>T, NR_110871.1:n.875C>G

Select item 143969378819.

rs1439693788 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 6:163051422 (GRCh38)
6:163472454 (GRCh37)
Canonical SPDI:: NC_000006.12:163051421:T:G
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000006.12:g.163051422T>G, NC_000006.11:g.163472454T>G, NG_011525.1:g.329291T>G, NR_110872.1:n.848A>C, NR_110871.1:n.848A>C

Select item 143520873220.

rs1435208732 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 6:163043094 (GRCh38)
6:163464126 (GRCh37)
Canonical SPDI:: NC_000006.12:163043093:A:G
Gene:: PACRG (Varview), PACRG-AS2 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000045/12 (TOPMED)
G=0.00046/8 (TOMMO)
G=0.002053/6 (KOREAN)
G=0.002183/4 (Korea1K)
HGVS:: NC_000006.12:g.163043094A>G, NC_000006.11:g.163464126A>G, NG_011525.1:g.320963A>G, NR_110871.1:n.1186T>C