SNP Links for Nucleotide (Select 574957279) - SNP

Links from Nucleotide

Items: 1 to 20 of 163

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Select item 14826998501.

rs1482699850 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:48590458 (GRCh38)
17:46667820 (GRCh37)
Canonical SPDI:: NC_000017.11:48590457:G:A
Gene:: HOXB3 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.48590458G>A, NC_000017.10:g.46667820G>A, NR_033201.2:n.39G>A, NR_033202.2:n.39G>A, NR_110331.1:n.39G>A

Select item 14818342692.

rs1481834269 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:48600454 (GRCh38)
17:46677816 (GRCh37)
Canonical SPDI:: NC_000017.11:48600453:G:A
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/1 (GnomAD_exomes)
A=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.48600454G>A, NC_000017.10:g.46677816G>A, NG_046953.1:g.9539C>T, NR_033202.2:n.178G>A, NR_033202.1:n.118G>A, NR_110331.1:n.178G>A, NR_033205.1:n.174G>A, NR_033203.1:n.81G>A

Select item 14804841013.

rs1480484101 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 17:48602104 (GRCh38)
17:46679466 (GRCh37)
Canonical SPDI:: NC_000017.11:48602103:G:C
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.48602104G>C, NC_000017.10:g.46679466G>C, NG_046953.1:g.7889C>G, NR_033202.2:n.299G>C, NR_033202.1:n.239G>C, NR_110331.1:n.535G>C, NR_033205.1:n.295G>C, NR_033203.1:n.202G>C, NR_110330.1:n.196G>C, NR_110329.1:n.99G>C

Select item 14726441964.

rs1472644196 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 17:48600512 (GRCh38)
17:46677874 (GRCh37)
Canonical SPDI:: NC_000017.11:48600511:A:C
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.48600512A>C, NC_000017.10:g.46677874A>C, NG_046953.1:g.9481T>G, NR_033202.2:n.236A>C, NR_033202.1:n.176A>C, NR_110331.1:n.236A>C, NR_033205.1:n.232A>C, NR_033203.1:n.139A>C

Select item 14677216925.

rs1467721692 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:48602268 (GRCh38)
17:46679630 (GRCh37)
Canonical SPDI:: NC_000017.11:48602267:C:T
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.48602268C>T, NC_000017.10:g.46679630C>T, NG_046953.1:g.7725G>A, NR_033202.2:n.463C>T, NR_033202.1:n.403C>T, NR_110331.1:n.699C>T, NR_033205.1:n.459C>T, NR_033203.1:n.366C>T, NR_110330.1:n.360C>T, NR_110329.1:n.263C>T

Select item 14622090186.

rs1462209018 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:48600519 (GRCh38)
17:46677881 (GRCh37)
Canonical SPDI:: NC_000017.11:48600518:C:A
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
HGVS:: NC_000017.11:g.48600519C>A, NC_000017.10:g.46677881C>A, NG_046953.1:g.9474G>T, NR_033202.2:n.243C>A, NR_033202.1:n.183C>A, NR_110331.1:n.243C>A, NR_033205.1:n.239C>A, NR_033203.1:n.146C>A

Select item 14596097357.

rs1459609735 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 17:48600533 (GRCh38)
17:46677895 (GRCh37)
Canonical SPDI:: NC_000017.11:48600532:T:G
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency
MAF:: G=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.48600533T>G, NC_000017.10:g.46677895T>G, NG_046953.1:g.9460A>C, NR_033202.2:n.257T>G, NR_033202.1:n.197T>G, NR_110331.1:n.257T>G, NR_033205.1:n.253T>G, NR_033203.1:n.160T>G

Select item 14534631658.

rs1453463165 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:48600498 (GRCh38)
17:46677860 (GRCh37)
Canonical SPDI:: NC_000017.11:48600497:C:T
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000054/1 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000023/3 (GnomAD_exomes)
T=0.000029/4 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000017.11:g.48600498C>T, NC_000017.10:g.46677860C>T, NG_046953.1:g.9495G>A, NR_033202.2:n.222C>T, NR_033202.1:n.162C>T, NR_110331.1:n.222C>T, NR_033205.1:n.218C>T, NR_033203.1:n.125C>T

Select item 14466045879.

rs1446604587 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 17:48602299 (GRCh38)
17:46679661 (GRCh37)
Canonical SPDI:: NC_000017.11:48602298:G:A,NC_000017.11:48602298:G:C
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000017.11:g.48602299G>A, NC_000017.11:g.48602299G>C, NC_000017.10:g.46679661G>A, NC_000017.10:g.46679661G>C, NG_046953.1:g.7694C>T, NG_046953.1:g.7694C>G, NR_033202.2:n.494G>A, NR_033202.2:n.494G>C, NR_033202.1:n.434G>A, NR_033202.1:n.434G>C, NR_110331.1:n.730G>A, NR_110331.1:n.730G>C, NR_033205.1:n.490G>A, NR_033205.1:n.490G>C, NR_033203.1:n.397G>A, NR_033203.1:n.397G>C, NR_110330.1:n.391G>A, NR_110330.1:n.391G>C, NR_110329.1:n.294G>A, NR_110329.1:n.294G>C

Select item 143851747710.

rs1438517477 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:48600474 (GRCh38)
17:46677836 (GRCh37)
Canonical SPDI:: NC_000017.11:48600473:C:T
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: T=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.48600474C>T, NC_000017.10:g.46677836C>T, NG_046953.1:g.9519G>A, NR_033202.2:n.198C>T, NR_033202.1:n.138C>T, NR_110331.1:n.198C>T, NR_033205.1:n.194C>T, NR_033203.1:n.101C>T

Select item 143555242711.

rs1435552427 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:48590431 (GRCh38)
17:46667793 (GRCh37)
Canonical SPDI:: NC_000017.11:48590430:T:C
Gene:: HOXB3 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.48590431T>C, NC_000017.10:g.46667793T>C, NR_033201.2:n.12T>C, NR_033202.2:n.12T>C, NR_110331.1:n.12T>C

Select item 143006510212.

rs1430065102 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:48600545 (GRCh38)
17:46677907 (GRCh37)
Canonical SPDI:: NC_000017.11:48600544:G:A
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000895/4 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/1 (GnomAD_exomes)
A=0.000893/4 (Estonian)
HGVS:: NC_000017.11:g.48600545G>A, NC_000017.10:g.46677907G>A, NG_046953.1:g.9448C>T, NR_033202.2:n.269G>A, NR_033202.1:n.209G>A, NR_110331.1:n.269G>A, NR_033205.1:n.265G>A, NR_033203.1:n.172G>A

Select item 142693582813.

rs1426935828 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:48602224 (GRCh38)
17:46679586 (GRCh37)
Canonical SPDI:: NC_000017.11:48602223:A:G
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.48602224A>G, NC_000017.10:g.46679586A>G, NG_046953.1:g.7769T>C, NR_033202.2:n.419A>G, NR_033202.1:n.359A>G, NR_110331.1:n.655A>G, NR_033205.1:n.415A>G, NR_033203.1:n.322A>G, NR_110330.1:n.316A>G, NR_110329.1:n.219A>G

Select item 141984216414.

rs1419842164 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:48600544 (GRCh38)
17:46677906 (GRCh37)
Canonical SPDI:: NC_000017.11:48600543:A:G
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
HGVS:: NC_000017.11:g.48600544A>G, NC_000017.10:g.46677906A>G, NG_046953.1:g.9449T>C, NR_033202.2:n.268A>G, NR_033202.1:n.208A>G, NR_110331.1:n.268A>G, NR_033205.1:n.264A>G, NR_033203.1:n.171A>G

Select item 141195200315.

rs1411952003 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:48602127 (GRCh38)
17:46679489 (GRCh37)
Canonical SPDI:: NC_000017.11:48602126:G:A
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.48602127G>A, NC_000017.10:g.46679489G>A, NG_046953.1:g.7866C>T, NR_033202.2:n.322G>A, NR_033202.1:n.262G>A, NR_110331.1:n.558G>A, NR_033205.1:n.318G>A, NR_033203.1:n.225G>A, NR_110330.1:n.219G>A, NR_110329.1:n.122G>A

Select item 140863583516.

rs1408635835 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:48600471 (GRCh38)
17:46677833 (GRCh37)
Canonical SPDI:: NC_000017.11:48600470:C:G
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.48600471C>G, NC_000017.10:g.46677833C>G, NG_046953.1:g.9522G>C, NR_033202.2:n.195C>G, NR_033202.1:n.135C>G, NR_110331.1:n.195C>G, NR_033205.1:n.191C>G, NR_033203.1:n.98C>G

Select item 140773656417.

rs1407736564 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:48602269 (GRCh38)
17:46679631 (GRCh37)
Canonical SPDI:: NC_000017.11:48602268:C:T
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000017.11:g.48602269C>T, NC_000017.10:g.46679631C>T, NG_046953.1:g.7724G>A, NR_033202.2:n.464C>T, NR_033202.1:n.404C>T, NR_110331.1:n.700C>T, NR_033205.1:n.460C>T, NR_033203.1:n.367C>T, NR_110330.1:n.361C>T, NR_110329.1:n.264C>T

Select item 140769190418.

rs1407691904 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:48602276 (GRCh38)
17:46679638 (GRCh37)
Canonical SPDI:: NC_000017.11:48602275:T:A
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000017.11:g.48602276T>A, NC_000017.10:g.46679638T>A, NG_046953.1:g.7717A>T, NR_033202.2:n.471T>A, NR_033202.1:n.411T>A, NR_110331.1:n.707T>A, NR_033205.1:n.467T>A, NR_033203.1:n.374T>A, NR_110330.1:n.368T>A, NR_110329.1:n.271T>A

Select item 139952738919.

rs1399527389 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:48600490 (GRCh38)
17:46677852 (GRCh37)
Canonical SPDI:: NC_000017.11:48600489:C:T
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000016/2 (GnomAD_exomes)
HGVS:: NC_000017.11:g.48600490C>T, NC_000017.10:g.46677852C>T, NG_046953.1:g.9503G>A, NR_033202.2:n.214C>T, NR_033202.1:n.154C>T, NR_110331.1:n.214C>T, NR_033205.1:n.210C>T, NR_033203.1:n.117C>T

Select item 139906200520.

rs1399062005 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:48602214 (GRCh38)
17:46679576 (GRCh37)
Canonical SPDI:: NC_000017.11:48602213:C:T
Gene:: HOXB6 (Varview), HOXB-AS3 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000008/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.48602214C>T, NC_000017.10:g.46679576C>T, NG_046953.1:g.7779G>A, NR_033202.2:n.409C>T, NR_033202.1:n.349C>T, NR_110331.1:n.645C>T, NR_033205.1:n.405C>T, NR_033203.1:n.312C>T, NR_110330.1:n.306C>T, NR_110329.1:n.209C>T

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