SNP Links for Nucleotide (Select 565671804) - SNP

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Links from Nucleotide

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Select item 14909522931.

rs1490952293 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:6587193 (GRCh38)
5:6587306 (GRCh37)
Canonical SPDI:: NC_000005.10:6587192:T:C
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.6587193T>C, NC_000005.9:g.6587306T>C, NR_024424.2:n.1746T>C, NR_024424.1:n.1725T>C, NR_024423.2:n.1732T>C, NR_024423.1:n.1694T>C

Select item 14904573482.

rs1490457348 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTTT>- [Show Flanks]
Chromosome:: 5:6587734 (GRCh38)
5:6587847 (GRCh37)
Canonical SPDI:: NC_000005.10:6587728:CTTTTCTTTT:CTTTT
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTTTTCTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
-=0.000035/1 (TOMMO)
HGVS:: NC_000005.10:g.6587729CTTTT[1], NC_000005.9:g.6587842CTTTT[1], NR_024424.2:n.2282CTTTT[1], NR_024424.1:n.2261CTTTT[1], NR_024423.2:n.2268CTTTT[1], NR_024423.1:n.2230CTTTT[1]

Select item 14878165813.

rs1487816581 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:6587027 (GRCh38)
5:6587140 (GRCh37)
Canonical SPDI:: NC_000005.10:6587026:A:G
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.6587027A>G, NC_000005.9:g.6587140A>G, NR_024424.2:n.1580A>G, NR_024424.1:n.1559A>G, NR_024423.2:n.1566A>G, NR_024423.1:n.1528A>G

Select item 14874112304.

rs1487411230 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 5:6587219 (GRCh38)
5:6587333 (GRCh37)
Canonical SPDI:: NC_000005.10:6587219:G:GG
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0.000071/1 (ALFA)
G=0.000083/22 (TOPMED)
G=0.000128/18 (GnomAD)
HGVS:: NC_000005.10:g.6587220dup, NC_000005.9:g.6587333dup, NR_024424.2:n.1773dup, NR_024424.1:n.1752dup, NR_024423.2:n.1759dup, NR_024423.1:n.1721dup

Select item 14862555315.

rs1486255531 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:6586945 (GRCh38)
5:6587058 (GRCh37)
Canonical SPDI:: NC_000005.10:6586944:A:G
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.6586945A>G, NC_000005.9:g.6587058A>G, NR_024424.2:n.1498A>G, NR_024424.1:n.1477A>G, NR_024423.2:n.1484A>G, NR_024423.1:n.1446A>G

Select item 14859764276.

rs1485976427 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:6588349 (GRCh38)
5:6588462 (GRCh37)
Canonical SPDI:: NC_000005.10:6588348:A:G
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.00006/16 (TOPMED)
HGVS:: NC_000005.10:g.6588349A>G, NC_000005.9:g.6588462A>G, NR_024424.2:n.2902A>G, NR_024424.1:n.2881A>G, NR_024423.2:n.2888A>G, NR_024423.1:n.2850A>G

Select item 14856896807.

rs1485689680 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:6587829 (GRCh38)
5:6587942 (GRCh37)
Canonical SPDI:: NC_000005.10:6587828:G:T
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000042/11 (TOPMED)
T=0.00005/7 (GnomAD)
HGVS:: NC_000005.10:g.6587829G>T, NC_000005.9:g.6587942G>T, NR_024424.2:n.2382G>T, NR_024424.1:n.2361G>T, NR_024423.2:n.2368G>T, NR_024423.1:n.2330G>T

Select item 14853157068.

rs1485315706 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 5:6583762 (GRCh38)
5:6583875 (GRCh37)
Canonical SPDI:: NC_000005.10:6583761:G:C
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000005.10:g.6583762G>C, NC_000005.9:g.6583875G>C, NR_024424.2:n.487G>C, NR_024424.1:n.466G>C, NR_024423.2:n.473G>C, NR_024423.1:n.435G>C

Select item 14839920179.

rs1483992017 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:6582228 (GRCh38)
5:6582341 (GRCh37)
Canonical SPDI:: NC_000005.10:6582227:C:T
Gene:: LINC01018 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000005.10:g.6582228C>T, NC_000005.9:g.6582341C>T, NR_024423.2:n.93C>T, NR_024423.1:n.55C>T

Select item 148294550110.

rs1482945501 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:6586655 (GRCh38)
5:6586768 (GRCh37)
Canonical SPDI:: NC_000005.10:6586654:T:C
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.6586655T>C, NC_000005.9:g.6586768T>C, NR_024424.2:n.1208T>C, NR_024424.1:n.1187T>C, NR_024423.2:n.1194T>C, NR_024423.1:n.1156T>C

Select item 147863918311.

rs1478639183 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATGGAGAAAC>- [Show Flanks]
Chromosome:: 5:6588188 (GRCh38)
5:6588301 (GRCh37)
Canonical SPDI:: NC_000005.10:6588184:AACATGGAGAAAC:AAC
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: -=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.6588188_6588197del, NC_000005.9:g.6588301_6588310del, NR_024424.2:n.2741_2750del, NR_024424.1:n.2720_2729del, NR_024423.2:n.2727_2736del, NR_024423.1:n.2689_2698del

Select item 147742989312.

rs1477429893 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:6582512 (GRCh38)
5:6582625 (GRCh37)
Canonical SPDI:: NC_000005.10:6582511:G:T
Gene:: LINC01018 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.6582512G>T, NC_000005.9:g.6582625G>T, NR_024423.2:n.224G>T, NR_024423.1:n.186G>T

Select item 147653847813.

rs1476538478 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 5:6587941 (GRCh38)
5:6588054 (GRCh37)
Canonical SPDI:: NC_000005.10:6587940:C:A,NC_000005.10:6587940:C:T
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.6587941C>A, NC_000005.10:g.6587941C>T, NC_000005.9:g.6588054C>A, NC_000005.9:g.6588054C>T, NR_024424.2:n.2494C>A, NR_024424.2:n.2494C>T, NR_024424.1:n.2473C>A, NR_024424.1:n.2473C>T, NR_024423.2:n.2480C>A, NR_024423.2:n.2480C>T, NR_024423.1:n.2442C>A, NR_024423.1:n.2442C>T

Select item 147618842514.

rs1476188425 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:6587876 (GRCh38)
5:6587989 (GRCh37)
Canonical SPDI:: NC_000005.10:6587875:T:C
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.6587876T>C, NC_000005.9:g.6587989T>C, NR_024424.2:n.2429T>C, NR_024424.1:n.2408T>C, NR_024423.2:n.2415T>C, NR_024423.1:n.2377T>C

Select item 147527457015.

rs1475274570 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 5:6587582 (GRCh38)
5:6587695 (GRCh37)
Canonical SPDI:: NC_000005.10:6587581:T:C,NC_000005.10:6587581:T:G
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.6587582T>C, NC_000005.10:g.6587582T>G, NC_000005.9:g.6587695T>C, NC_000005.9:g.6587695T>G, NR_024424.2:n.2135T>C, NR_024424.2:n.2135T>G, NR_024424.1:n.2114T>C, NR_024424.1:n.2114T>G, NR_024423.2:n.2121T>C, NR_024423.2:n.2121T>G, NR_024423.1:n.2083T>C, NR_024423.1:n.2083T>G

Select item 147495044616.

rs1474950446 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 5:6586369 (GRCh38)
5:6586482 (GRCh37)
Canonical SPDI:: NC_000005.10:6586368:GGG:GG
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.6586371del, NC_000005.9:g.6586484del, NR_024424.2:n.924del, NR_024424.1:n.903del, NR_024423.2:n.910del, NR_024423.1:n.872del

Select item 147415780117.

rs1474157801 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:6585892 (GRCh38)
5:6586005 (GRCh37)
Canonical SPDI:: NC_000005.10:6585891:G:A
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.6585892G>A, NC_000005.9:g.6586005G>A, NR_024424.2:n.645G>A, NR_024424.1:n.624G>A, NR_024423.2:n.631G>A, NR_024423.1:n.593G>A

Select item 147267899618.

rs1472678996 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:6586388 (GRCh38)
5:6586501 (GRCh37)
Canonical SPDI:: NC_000005.10:6586387:C:T
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
HGVS:: NC_000005.10:g.6586388C>T, NC_000005.9:g.6586501C>T, NR_024424.2:n.941C>T, NR_024424.1:n.920C>T, NR_024423.2:n.927C>T, NR_024423.1:n.889C>T

Select item 147168040419.

rs1471680404 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:6586778 (GRCh38)
5:6586891 (GRCh37)
Canonical SPDI:: NC_000005.10:6586777:C:T
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.6586778C>T, NC_000005.9:g.6586891C>T, NR_024424.2:n.1331C>T, NR_024424.1:n.1310C>T, NR_024423.2:n.1317C>T, NR_024423.1:n.1279C>T

Select item 147143221520.

rs1471432215 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 5:6585988 (GRCh38)
5:6586101 (GRCh37)
Canonical SPDI:: NC_000005.10:6585987:G:C
Gene:: LINC01018 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.6585988G>C, NC_000005.9:g.6586101G>C, NR_024424.2:n.741G>C, NR_024424.1:n.720G>C, NR_024423.2:n.727G>C, NR_024423.1:n.689G>C