SNP Links for Nucleotide (Select 563580314) - SNP

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Links from Nucleotide

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Select item 14839770341.

rs1483977034 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49296523 (GRCh38)
10:50504568 (GRCh37)
Canonical SPDI:: NC_000010.11:49296522:G:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.49296523G>A, NC_000010.10:g.50504568G>A, NR_108038.1:n.455C>T

Select item 14782536502.

rs1478253650 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 10:49296732 (GRCh38)
10:50504777 (GRCh37)
Canonical SPDI:: NC_000010.11:49296731:G:A,NC_000010.11:49296731:G:C
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.49296732G>A, NC_000010.11:g.49296732G>C, NC_000010.10:g.50504777G>A, NC_000010.10:g.50504777G>C, NR_108038.1:n.246C>T, NR_108038.1:n.246C>G

Select item 14765645763.

rs1476564576 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49296622 (GRCh38)
10:50504667 (GRCh37)
Canonical SPDI:: NC_000010.11:49296621:G:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.49296622G>A, NC_000010.10:g.50504667G>A, NR_108038.1:n.356C>T

Select item 14697197504.

rs1469719750 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:49296594 (GRCh38)
10:50504639 (GRCh37)
Canonical SPDI:: NC_000010.11:49296593:G:C
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
C=0.000342/1 (KOREAN)
C=0.001345/23 (TOMMO)
HGVS:: NC_000010.11:g.49296594G>C, NC_000010.10:g.50504639G>C, NR_108038.1:n.384C>G

Select item 14682377965.

rs1468237796 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 10:49296720 (GRCh38)
10:50504765 (GRCh37)
Canonical SPDI:: NC_000010.11:49296719:T:A,NC_000010.11:49296719:T:C
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.49296720T>A, NC_000010.11:g.49296720T>C, NC_000010.10:g.50504765T>A, NC_000010.10:g.50504765T>C, NR_108038.1:n.258A>T, NR_108038.1:n.258A>G

Select item 14664655586.

rs1466465558 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTAG>- [Show Flanks]
Chromosome:: 10:49296303 (GRCh38)
10:50504348 (GRCh37)
Canonical SPDI:: NC_000010.11:49296300:AGTTAG:AG
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.49296303_49296306del, NC_000010.10:g.50504348_50504351del, NR_108038.1:n.674_677del

Select item 14601973767.

rs1460197376 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CATTCACAT [Show Flanks]
Chromosome:: 10:49296571 (GRCh38)
10:50504617 (GRCh37)
Canonical SPDI:: NC_000010.11:49296571:TCATTCACAT:TCATTCACATCATTCACAT
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCATTCACATCATTCACAT=0.000169/2 (ALFA)
TCATTCACA=0.000135/19 (GnomAD)
TCATTCACA=0.000162/43 (TOPMED)
HGVS:: NC_000010.11:g.49296573_49296581dup, NC_000010.10:g.50504618_50504626dup, NR_108038.1:n.398_406dup

Select item 14574872558.

rs1457487255 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:49298874 (GRCh38)
10:50506919 (GRCh37)
Canonical SPDI:: NC_000010.11:49298873:T:C
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.49298874T>C, NC_000010.10:g.50506919T>C, NR_108038.1:n.20A>G

Select item 14544062999.

rs1454406299 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:49298694 (GRCh38)
10:50506739 (GRCh37)
Canonical SPDI:: NC_000010.11:49298693:C:T
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.49298694C>T, NC_000010.10:g.50506739C>T, NR_108038.1:n.200G>A

Select item 145283124610.

rs1452831246 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:49298826 (GRCh38)
10:50506871 (GRCh37)
Canonical SPDI:: NC_000010.11:49298825:C:A,NC_000010.11:49298825:C:T
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00007/1 (ALFA)
T=0.00022/1 (Estonian)
HGVS:: NC_000010.11:g.49298826C>A, NC_000010.11:g.49298826C>T, NC_000010.10:g.50506871C>A, NC_000010.10:g.50506871C>T, NR_108038.1:n.68G>T, NR_108038.1:n.68G>A

Select item 145191179511.

rs1451911795 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 10:49296623 (GRCh38)
10:50504668 (GRCh37)
Canonical SPDI:: NC_000010.11:49296622:G:A,NC_000010.11:49296622:G:C
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
C=0.000318/5 (TOMMO)
A=0.000342/1 (KOREAN)
HGVS:: NC_000010.11:g.49296623G>A, NC_000010.11:g.49296623G>C, NC_000010.10:g.50504668G>A, NC_000010.10:g.50504668G>C, NR_108038.1:n.355C>T, NR_108038.1:n.355C>G

Select item 145130849512.

rs1451308495 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49296333 (GRCh38)
10:50504378 (GRCh37)
Canonical SPDI:: NC_000010.11:49296332:G:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.49296333G>A, NC_000010.10:g.50504378G>A, NR_108038.1:n.645C>T

Select item 144613209113.

rs1446132091 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 10:49296747 (GRCh38)
10:50504792 (GRCh37)
Canonical SPDI:: NC_000010.11:49296746:T:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.49296747T>A, NC_000010.10:g.50504792T>A, NR_108038.1:n.231A>T

Select item 144297731314.

rs1442977313 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49296368 (GRCh38)
10:50504413 (GRCh37)
Canonical SPDI:: NC_000010.11:49296367:G:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000010.11:g.49296368G>A, NC_000010.10:g.50504413G>A, NR_108038.1:n.610C>T

Select item 144113607315.

rs1441136073 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:49298811 (GRCh38)
10:50506856 (GRCh37)
Canonical SPDI:: NC_000010.11:49298810:G:T
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.49298811G>T, NC_000010.10:g.50506856G>T, NR_108038.1:n.83C>A

Select item 143926376416.

rs1439263764 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49298704 (GRCh38)
10:50506749 (GRCh37)
Canonical SPDI:: NC_000010.11:49298703:G:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.49298704G>A, NC_000010.10:g.50506749G>A, NR_108038.1:n.190C>T

Select item 143725442017.

rs1437254420 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:49296507 (GRCh38)
10:50504552 (GRCh37)
Canonical SPDI:: NC_000010.11:49296506:T:C
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.49296507T>C, NC_000010.10:g.50504552T>C, NR_108038.1:n.471A>G

Select item 143494933018.

rs1434949330 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:49298785 (GRCh38)
10:50506830 (GRCh37)
Canonical SPDI:: NC_000010.11:49298784:G:T
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.49298785G>T, NC_000010.10:g.50506830G>T, NR_108038.1:n.109C>A

Select item 143444854119.

rs1434448541 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:49298760 (GRCh38)
10:50506805 (GRCh37)
Canonical SPDI:: NC_000010.11:49298759:A:T
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.49298760A>T, NC_000010.10:g.50506805A>T, NR_108038.1:n.134T>A

Select item 142658594620.

rs1426585946 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:49296671 (GRCh38)
10:50504716 (GRCh37)
Canonical SPDI:: NC_000010.11:49296670:T:G
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000010.11:g.49296671T>G, NC_000010.10:g.50504716T>G, NR_108038.1:n.307A>C