SNP Links for Nucleotide (Select 537544667) - SNP

Links from Nucleotide

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Select item 14906562581.

rs1490656258 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 16:86286158 (GRCh38)
16:86319764 (GRCh37)
Canonical SPDI:: NC_000016.10:86286157:G:A,NC_000016.10:86286157:G:T
Gene:: LINC02135 (Varview), LINC01081 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.86286158G>A, NC_000016.10:g.86286158G>T, NC_000016.9:g.86319764G>A, NC_000016.9:g.86319764G>T, NR_104139.1:n.90C>T, NR_104139.1:n.90C>A

Select item 14773841092.

rs1477384109 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:86286198 (GRCh38)
16:86319804 (GRCh37)
Canonical SPDI:: NC_000016.10:86286197:C:T
Gene:: LINC02135 (Varview), LINC01081 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000042/11 (TOPMED)
T=0.000043/6 (GnomAD)
HGVS:: NC_000016.10:g.86286198C>T, NC_000016.9:g.86319804C>T, NR_104139.1:n.50G>A

Select item 14725440843.

rs1472544084 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:86225928 (GRCh38)
16:86259534 (GRCh37)
Canonical SPDI:: NC_000016.10:86225927:G:C
Gene:: LINC01081 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.86225928G>C, NC_000016.9:g.86259534G>C, NR_104139.1:n.567C>G

Select item 14720850674.

rs1472085067 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 16:86226738 (GRCh38)
16:86260344 (GRCh37)
Canonical SPDI:: NC_000016.10:86226737:T:C,NC_000016.10:86226737:T:G
Gene:: LINC01081 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
C=0.000342/1 (KOREAN)
HGVS:: NC_000016.10:g.86226738T>C, NC_000016.10:g.86226738T>G, NC_000016.9:g.86260344T>C, NC_000016.9:g.86260344T>G, NR_104139.1:n.434A>G, NR_104139.1:n.434A>C

Select item 14715611685.

rs1471561168 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:86226663 (GRCh38)
16:86260269 (GRCh37)
Canonical SPDI:: NC_000016.10:86226662:C:T
Gene:: LINC01081 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000108/2 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000021/3 (GnomAD)
T=0.000223/1 (Estonian)
HGVS:: NC_000016.10:g.86226663C>T, NC_000016.9:g.86260269C>T, NR_104139.1:n.509G>A

Select item 14653284476.

rs1465328447 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:86286083 (GRCh38)
16:86319689 (GRCh37)
Canonical SPDI:: NC_000016.10:86286082:G:T
Gene:: LINC02135 (Varview), LINC01081 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.86286083G>T, NC_000016.9:g.86319689G>T, NR_104139.1:n.165C>A

Select item 14635594077.

rs1463559407 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:86225622 (GRCh38)
16:86259228 (GRCh37)
Canonical SPDI:: NC_000016.10:86225621:A:G
Gene:: LINC01081 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.86225622A>G, NC_000016.9:g.86259228A>G, NR_104139.1:n.694T>C

Select item 14570598408.

rs1457059840 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 16:86286105 (GRCh38)
16:86319711 (GRCh37)
Canonical SPDI:: NC_000016.10:86286104:T:C,NC_000016.10:86286104:T:G
Gene:: LINC02135 (Varview), LINC01081 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.86286105T>C, NC_000016.10:g.86286105T>G, NC_000016.9:g.86319711T>C, NC_000016.9:g.86319711T>G, NR_104139.1:n.143A>G, NR_104139.1:n.143A>C

Select item 14478362729.

rs1447836272 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:86269083 (GRCh38)
16:86302689 (GRCh37)
Canonical SPDI:: NC_000016.10:86269082:C:T
Gene:: LINC01081 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.86269083C>T, NC_000016.9:g.86302689C>T, NR_104139.1:n.315G>A

Select item 144552288010.

rs1445522880 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:86286061 (GRCh38)
16:86319667 (GRCh37)
Canonical SPDI:: NC_000016.10:86286060:C:G,NC_000016.10:86286060:C:T
Gene:: LINC02135 (Varview), LINC01081 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000029/4 (GnomAD)
HGVS:: NC_000016.10:g.86286061C>G, NC_000016.10:g.86286061C>T, NC_000016.9:g.86319667C>G, NC_000016.9:g.86319667C>T, NR_104139.1:n.187G>C, NR_104139.1:n.187G>A

Select item 144286269011.

rs1442862690 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:86275716 (GRCh38)
16:86309322 (GRCh37)
Canonical SPDI:: NC_000016.10:86275715:C:T
Gene:: LINC01081 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.86275716C>T, NC_000016.9:g.86309322C>T, NR_104139.1:n.301G>A

Select item 143558084012.

rs1435580840 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:86269077 (GRCh38)
16:86302683 (GRCh37)
Canonical SPDI:: NC_000016.10:86269076:T:C
Gene:: LINC01081 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.86269077T>C, NC_000016.9:g.86302683T>C, NR_104139.1:n.321A>G

Select item 142494863413.

rs1424948634 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:86226679 (GRCh38)
16:86260285 (GRCh37)
Canonical SPDI:: NC_000016.10:86226678:G:A
Gene:: LINC01081 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.86226679G>A, NC_000016.9:g.86260285G>A, NR_104139.1:n.493C>T

Select item 142150845014.

rs1421508450 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 16:86286086 (GRCh38)
16:86319692 (GRCh37)
Canonical SPDI:: NC_000016.10:86286085:C:G,NC_000016.10:86286085:C:T
Gene:: LINC02135 (Varview), LINC01081 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.86286086C>G, NC_000016.10:g.86286086C>T, NC_000016.9:g.86319692C>G, NC_000016.9:g.86319692C>T, NR_104139.1:n.162G>C, NR_104139.1:n.162G>A

Select item 141372024415.

rs1413720244 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 16:86269067 (GRCh38)
16:86302673 (GRCh37)
Canonical SPDI:: NC_000016.10:86269066:C:A,NC_000016.10:86269066:C:G
Gene:: LINC01081 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.86269067C>A, NC_000016.10:g.86269067C>G, NC_000016.9:g.86302673C>A, NC_000016.9:g.86302673C>G, NR_104139.1:n.331G>T, NR_104139.1:n.331G>C

Select item 141134969816.

rs1411349698 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:86269032 (GRCh38)
16:86302638 (GRCh37)
Canonical SPDI:: NC_000016.10:86269031:A:C
Gene:: LINC01081 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000016.10:g.86269032A>C, NC_000016.9:g.86302638A>C, NR_104139.1:n.366T>G

Select item 141118242617.

rs1411182426 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:86275767 (GRCh38)
16:86309373 (GRCh37)
Canonical SPDI:: NC_000016.10:86275766:C:A
Gene:: LINC01081 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.86275767C>A, NC_000016.9:g.86309373C>A, NR_104139.1:n.250G>T

Select item 140770966318.

rs1407709663 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:86286064 (GRCh38)
16:86319670 (GRCh37)
Canonical SPDI:: NC_000016.10:86286063:C:G
Gene:: LINC02135 (Varview), LINC01081 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000224/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000016.10:g.86286064C>G, NC_000016.9:g.86319670C>G, NR_104139.1:n.184G>C

Select item 140762763519.

rs1407627635 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:86269010 (GRCh38)
16:86302616 (GRCh37)
Canonical SPDI:: NC_000016.10:86269009:G:A
Gene:: LINC01081 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000016.10:g.86269010G>A, NC_000016.9:g.86302616G>A, NR_104139.1:n.388C>T

Select item 140143136620.

rs1401431366 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:86275756 (GRCh38)
16:86309362 (GRCh37)
Canonical SPDI:: NC_000016.10:86275755:A:G
Gene:: LINC01081 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.86275756A>G, NC_000016.9:g.86309362A>G, NR_104139.1:n.261T>C

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