SNP Links for Nucleotide (Select 52218825) - SNP

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Links from Nucleotide

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Select item 14839212541.

rs1483921254 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:122519555 (GRCh38)
9:125281834 (GRCh37)
Canonical SPDI:: NC_000009.12:122519554:G:A
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant,genic_upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000028/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000009.12:g.122519555G>A, NC_000009.11:g.125281834G>A, NM_001004452.1:c.415G>A, NP_001004452.1:p.Gly139Arg

Select item 14821471592.

rs1482147159 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:122519200 (GRCh38)
9:125281479 (GRCh37)
Canonical SPDI:: NC_000009.12:122519199:G:C
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant,genic_upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.122519200G>C, NC_000009.11:g.125281479G>C, NM_001004452.1:c.60G>C, NP_001004452.1:p.Trp20Cys

Select item 14818426023.

rs1481842602 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:122519742 (GRCh38)
9:125282021 (GRCh37)
Canonical SPDI:: NC_000009.12:122519741:C:A
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant,genic_upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.122519742C>A, NC_000009.11:g.125282021C>A, NM_001004452.1:c.602C>A, NP_001004452.1:p.Thr201Lys

Select item 14806367984.

rs1480636798 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:122519391 (GRCh38)
9:125281670 (GRCh37)
Canonical SPDI:: NC_000009.12:122519390:G:A
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: intron_variant,missense_variant,coding_sequence_variant,genic_upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.122519391G>A, NC_000009.11:g.125281670G>A, NM_001004452.1:c.251G>A, NP_001004452.1:p.Ser84Asn

Select item 14791019575.

rs1479101957 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 9:122519989 (GRCh38)
9:125282268 (GRCh37)
Canonical SPDI:: NC_000009.12:122519988:A:C,NC_000009.12:122519988:A:T
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: intron_variant,coding_sequence_variant,genic_upstream_transcript_variant,synonymous_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000031/1 (ALFA)
C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.122519989A>C, NC_000009.12:g.122519989A>T, NC_000009.11:g.125282268A>C, NC_000009.11:g.125282268A>T, NM_001004452.1:c.849A>C, NM_001004452.1:c.849A>T

Select item 14748507006.

rs1474850700 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:122519569 (GRCh38)
9:125281848 (GRCh37)
Canonical SPDI:: NC_000009.12:122519568:A:C
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (GnomAD_exomes)
C=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.122519569A>C, NC_000009.11:g.125281848A>C, NM_001004452.1:c.429A>C, NP_001004452.1:p.Leu143Phe

Select item 14745246487.

rs1474524648 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:122519273 (GRCh38)
9:125281552 (GRCh37)
Canonical SPDI:: NC_000009.12:122519272:A:G
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000043/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000015/4 (TOPMED)
G=0.000016/4 (GnomAD_exomes)
HGVS:: NC_000009.12:g.122519273A>G, NC_000009.11:g.125281552A>G, NM_001004452.1:c.133A>G, NP_001004452.1:p.Ile45Val

Select item 14742703638.

rs1474270363 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:122519485 (GRCh38)
9:125281764 (GRCh37)
Canonical SPDI:: NC_000009.12:122519484:C:G
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: coding_sequence_variant,genic_upstream_transcript_variant,intron_variant,synonymous_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.122519485C>G, NC_000009.11:g.125281764C>G, NM_001004452.1:c.345C>G

Select item 14739721489.

rs1473972148 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:122520008 (GRCh38)
9:125282287 (GRCh37)
Canonical SPDI:: NC_000009.12:122520007:T:C
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.122520008T>C, NC_000009.11:g.125282287T>C, NM_001004452.1:c.868T>C, NP_001004452.1:p.Tyr290His

Select item 147194332810.

rs1471943328 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:122519284 (GRCh38)
9:125281563 (GRCh37)
Canonical SPDI:: NC_000009.12:122519283:C:T
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: coding_sequence_variant,genic_upstream_transcript_variant,intron_variant,synonymous_variant,genic_downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.122519284C>T, NC_000009.11:g.125281563C>T, NM_001004452.1:c.144C>T

Select item 146957586611.

rs1469575866 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 9:122519476 (GRCh38)
9:125281755 (GRCh37)
Canonical SPDI:: NC_000009.12:122519475:T:G
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
G=0.000007/1 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000009.12:g.122519476T>G, NC_000009.11:g.125281755T>G, NM_001004452.1:c.336T>G, NP_001004452.1:p.Asn112Lys

Select item 146702822412.

rs1467028224 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 9:122519804 (GRCh38)
9:125282083 (GRCh37)
Canonical SPDI:: NC_000009.12:122519803:G:C
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.122519804G>C, NC_000009.11:g.125282083G>C, NM_001004452.1:c.664G>C, NP_001004452.1:p.Gly222Arg

Select item 146395437513.

rs1463954375 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:122519923 (GRCh38)
9:125282202 (GRCh37)
Canonical SPDI:: NC_000009.12:122519922:C:A
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: coding_sequence_variant,genic_upstream_transcript_variant,intron_variant,synonymous_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.122519923C>A, NC_000009.11:g.125282202C>A, NM_001004452.1:c.783C>A

Select item 146360804314.

rs1463608043 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:122519444 (GRCh38)
9:125281723 (GRCh37)
Canonical SPDI:: NC_000009.12:122519443:T:C
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: missense_variant,coding_sequence_variant,genic_upstream_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.122519444T>C, NC_000009.11:g.125281723T>C, NM_001004452.1:c.304T>C, NP_001004452.1:p.Tyr102His

Select item 145640491215.

rs1456404912 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:122519211 (GRCh38)
9:125281490 (GRCh37)
Canonical SPDI:: NC_000009.12:122519210:A:T
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: missense_variant,intron_variant,coding_sequence_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.122519211A>T, NC_000009.11:g.125281490A>T, NM_001004452.1:c.71A>T, NP_001004452.1:p.Gln24Leu

Select item 145396583716.

rs1453965837 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:122519795 (GRCh38)
9:125282074 (GRCh37)
Canonical SPDI:: NC_000009.12:122519794:G:A
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: missense_variant,intron_variant,coding_sequence_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.122519795G>A, NC_000009.11:g.125282074G>A, NM_001004452.1:c.655G>A, NP_001004452.1:p.Gly219Ser

Select item 145257533817.

rs1452575338 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:122520012 (GRCh38)
9:125282291 (GRCh37)
Canonical SPDI:: NC_000009.12:122520011:G:A
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: missense_variant,intron_variant,coding_sequence_variant,genic_downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (GnomAD_exomes)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.122520012G>A, NC_000009.11:g.125282291G>A, NM_001004452.1:c.872G>A, NP_001004452.1:p.Ser291Asn

Select item 144334656118.

rs1443346561 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:122519433 (GRCh38)
9:125281712 (GRCh37)
Canonical SPDI:: NC_000009.12:122519432:T:C
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,missense_variant,intron_variant,coding_sequence_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.122519433T>C, NC_000009.11:g.125281712T>C, NM_001004452.1:c.293T>C, NP_001004452.1:p.Val98Ala

Select item 144048960619.

rs1440489606 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:122519295 (GRCh38)
9:125281574 (GRCh37)
Canonical SPDI:: NC_000009.12:122519294:A:G
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,missense_variant,intron_variant,coding_sequence_variant,genic_upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.122519295A>G, NC_000009.11:g.125281574A>G, NM_001004452.1:c.155A>G, NP_001004452.1:p.Asp52Gly

Select item 143989608520.

rs1439896085 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 9:122519362 (GRCh38)
9:125281641 (GRCh37)
Canonical SPDI:: NC_000009.12:122519361:A:T
Gene:: OR1J4 (Varview), OR1J2 (Varview)
Functional Consequence:: synonymous_variant,genic_downstream_transcript_variant,intron_variant,coding_sequence_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.122519362A>T, NC_000009.11:g.125281641A>T, NM_001004452.1:c.222A>T